Variant report

Variant	rs7146473
Chromosome Location	chr14:79451465-79451466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12436039	0.91[JPT][hapmap]
rs150774	0.84[CHB][hapmap]
rs154343	0.81[CHB][hapmap]
rs17108405	0.82[CHB][hapmap]
rs17108457	0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs257210	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs31409	0.83[ASN][1000 genomes]
rs31424	0.89[CEU][hapmap]
rs31426	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs31429	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs31436	0.83[CHB][hapmap]
rs31437	0.82[CHB][hapmap]
rs31448	0.82[CHB][hapmap]
rs61995273	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8007461	0.81[CHB][hapmap]
rs8012310	0.86[CHB][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79449600-79452400	Weak transcription	Osteobl	bone
2	chr14:79450400-79451800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr14:79450400-79451800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr14:79450400-79452400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr14:79450800-79451600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:79450800-79451600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:79450800-79451800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:79450800-79452600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr14:79451000-79451600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:79451000-79452400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr14:79451000-79452600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:79451200-79452200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr14:79451200-79452800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:79451400-79451600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr14:79451400-79452400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:79451400-79452400	Enhancers	NH-A	brain
17	chr14:79451400-79452600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:79451400-79452800	Enhancers	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links