Variant report

Variant	rs71464844
Chromosome Location	chr15:34347123-34347124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34330893..34332620-chr15:34346063..34348142,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169857	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11634415	0.80[EUR][1000 genomes]
rs11634610	1.00[ASN][1000 genomes]
rs11634771	1.00[ASN][1000 genomes]
rs11635479	0.80[AMR][1000 genomes]
rs11638109	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12898898	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12903907	0.81[EUR][1000 genomes]
rs12917116	0.92[EUR][1000 genomes]
rs17817764	1.00[ASN][1000 genomes]
rs2339352	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2684940	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2705338	0.80[EUR][1000 genomes]
rs34448088	1.00[ASN][1000 genomes]
rs34474029	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35531038	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35804445	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4477671	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4779656	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4779657	1.00[ASN][1000 genomes]
rs4780203	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs541098	0.93[EUR][1000 genomes]
rs62014670	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62014671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62014673	0.92[EUR][1000 genomes]
rs62014674	1.00[ASN][1000 genomes]
rs6495442	0.80[AMR][1000 genomes]
rs6495443	0.80[AMR][1000 genomes]
rs66530874	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67739072	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7162140	0.80[AMR][1000 genomes]
rs7168640	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7173183	0.80[AMR][1000 genomes]
rs7175823	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72718678	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72718682	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8030094	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8033781	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8039219	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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