Variant report

Variant	rs7146510
Chromosome Location	chr14:40337798-40337799
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2145706	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34722287	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899454	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4903097	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7145722	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7157546	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8009251	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8015114	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8015597	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8020344	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8021578	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832776	chr14:40203172-40342229	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv530658	chr14:40214958-40734070	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2751272	chr14:40216880-40913230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1040418	chr14:40293500-40339528	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv525070	chr14:40302876-40353756	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv901660	chr14:40302876-40410765	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1047949	chr14:40307360-40474579	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40333400-40348600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:40337000-40338000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr14:40337000-40338200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:40337200-40338000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr14:40337200-40338000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:40337200-40338000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr14:40337200-40338200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr14:40337200-40338200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr14:40337200-40339000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:40337600-40338000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr14:40337600-40338000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:40337600-40338200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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