Variant report

Variant	rs71468182
Chromosome Location	chr12:82922512-82922513
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11834171	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12816841	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12826548	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12829683	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17009700	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17009702	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17009705	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34534155	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3861075	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4882511	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4882512	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4882513	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4882514	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56175170	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71468186	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9805047	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041954	chr12:82314981-83008609	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv541550	chr12:82314981-83008609	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1053093	chr12:82645292-83287809	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv541551	chr12:82645292-83287809	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv559541	chr12:82715210-83108395	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv899348	chr12:82744187-83169297	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv519197	chr12:82831845-83056476	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1053649	chr12:82893253-83054109	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv427917	chr12:82917031-83279712	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:82919000-82922600	Weak transcription	Fetal Stomach	stomach
2	chr12:82919000-82923000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr12:82921200-82922600	Weak transcription	Brain Anterior Caudate	brain
4	chr12:82921200-82922600	Weak transcription	Brain Hippocampus Middle	brain
5	chr12:82921200-82922800	Weak transcription	Liver	Liver
6	chr12:82921200-82922800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr12:82921200-82923000	Enhancers	Brain Cingulate Gyrus	brain
8	chr12:82921800-82922600	Weak transcription	Brain Substantia Nigra	brain
9	chr12:82922200-82923800	Enhancers	Brain Angular Gyrus	brain
10	chr12:82922400-82924000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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