Variant report

Variant	rs71472417
Chromosome Location	chr13:46192425-46192426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1020028	0.87[ASN][1000 genomes]
rs16970035	0.85[ASN][1000 genomes]
rs16970049	0.88[ASN][1000 genomes]
rs16970052	0.88[ASN][1000 genomes]
rs16970054	0.88[ASN][1000 genomes]
rs16970112	0.92[ASN][1000 genomes]
rs16970130	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4924404	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs554336	0.82[ASN][1000 genomes]
rs59688263	0.86[ASN][1000 genomes]
rs73388549	0.94[ASN][1000 genomes]
rs7496588	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv561579	chr13:46154749-46208065	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:46190200-46202400	Weak transcription	Right Atrium	heart
2	chr13:46190400-46194000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr13:46190400-46195800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:46190400-46195800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:46190800-46195400	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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