Variant report
| Variant | rs71472838 |
|---|---|
| Chromosome Location | chr2:207815234-207815235 |
| allele | AACAGTGC/GTCAGTGT |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs11010026 | 0.82[AMR][1000 genomes] |
| rs1412780 | 0.81[AMR][1000 genomes] |
| rs1537348 | 0.81[AMR][1000 genomes] |
| rs1537349 | 0.81[AMR][1000 genomes] |
| rs1537350 | 0.81[AMR][1000 genomes] |
| rs1819479 | 0.84[AMR][1000 genomes] |
| rs1855151 | 0.84[AMR][1000 genomes] |
| rs2095126 | 0.81[AMR][1000 genomes] |
| rs2104910 | 0.81[AMR][1000 genomes] |
| rs2358396 | 0.82[AMR][1000 genomes] |
| rs2483077 | 0.83[AMR][1000 genomes] |
| rs2483081 | 0.81[AMR][1000 genomes] |
| rs2483084 | 0.81[AMR][1000 genomes] |
| rs2483085 | 0.81[AMR][1000 genomes] |
| rs2483087 | 0.81[AMR][1000 genomes] |
| rs2486059 | 0.83[AMR][1000 genomes] |
| rs2486061 | 0.83[AMR][1000 genomes] |
| rs2496048 | 0.81[AMR][1000 genomes] |
| rs2496049 | 0.81[AMR][1000 genomes] |
| rs2496070 | 0.84[AMR][1000 genomes] |
| rs2496078 | 0.81[AMR][1000 genomes] |
| rs2496079 | 0.81[AMR][1000 genomes] |
| rs2496087 | 0.82[AMR][1000 genomes] |
| rs2993647 | 0.84[AMR][1000 genomes] |
| rs3001935 | 0.84[AMR][1000 genomes] |
| rs3120812 | 0.81[AMR][1000 genomes] |
| rs3864826 | 0.82[AMR][1000 genomes] |
| rs3864827 | 0.82[AMR][1000 genomes] |
| rs3864829 | 0.82[AMR][1000 genomes] |
| rs3904489 | 0.82[AMR][1000 genomes] |
| rs3904885 | 0.82[AMR][1000 genomes] |
| rs7899646 | 0.84[AMR][1000 genomes] |
| rs7899800 | 0.89[AMR][1000 genomes] |
| rs9702633 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9703342 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011347 | chr2:207248731-207950497 | Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv531676 | chr2:207256624-207943718 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv875740 | chr2:207740730-207839506 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:207813000-207815600 | Weak transcription | Gastric | stomach |
| 2 | chr2:207813000-207827400 | Weak transcription | Aorta | Aorta |
