Variant report

Variant	rs7147370
Chromosome Location	chr14:24821051-24821052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24820066..24821723-chr14:24836134..24837695,2	K562	blood:
2	chr14:24816528..24849574-chr14:24893305..24914155,145	MCF-7	breast:
3	chr14:24789439..24822082-chr14:24898039..24913135,99	MCF-7	breast:
4	chr14:24820479..24821291-chr14:24900677..24901564,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100441	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000100445	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12881276	0.82[AMR][1000 genomes]
rs3181256	0.81[ASN][1000 genomes]
rs8014112	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24816600-24823000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr14:24818600-24824600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:24819800-24821400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:24820400-24824000	Enhancers	Osteobl	bone
5	chr14:24820600-24821200	Enhancers	Placenta	Placenta
6	chr14:24820600-24821200	Enhancers	K562	blood
7	chr14:24820600-24821600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:24820600-24821600	Enhancers	Fetal Kidney	kidney
9	chr14:24820600-24821600	Enhancers	HSMM	muscle
10	chr14:24820600-24821800	Enhancers	NHLF	lung
11	chr14:24820600-24823400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:24820600-24824800	Enhancers	NHDF-Ad	bronchial
13	chr14:24820800-24821200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:24820800-24821200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:24820800-24821200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:24820800-24821200	Bivalent Enhancer	Adipose Nuclei	Adipose
17	chr14:24820800-24821200	Enhancers	Duodenum Mucosa	Duodenum
18	chr14:24820800-24821200	Enhancers	Esophagus	oesophagus
19	chr14:24820800-24821200	Enhancers	Lung	lung
20	chr14:24820800-24821200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr14:24820800-24821200	Bivalent Enhancer	A549	lung
22	chr14:24820800-24821200	Enhancers	HMEC	breast
23	chr14:24820800-24821400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:24820800-24821400	Enhancers	Fetal Lung	lung
25	chr14:24820800-24821600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:24820800-24821600	Enhancers	Stomach Mucosa	stomach
27	chr14:24821000-24821200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:24821000-24821200	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr14:24821000-24821200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:24821000-24821200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr14:24821000-24821200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
32	chr14:24821000-24821200	Enhancers	Liver	Liver
33	chr14:24821000-24821200	Bivalent Enhancer	Brain Anterior Caudate	brain
34	chr14:24821000-24821200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
35	chr14:24821000-24821200	Enhancers	Fetal Intestine Small	intestine
36	chr14:24821000-24821200	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr14:24821000-24821400	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr14:24821000-24821600	Enhancers	Fetal Stomach	stomach
39	chr14:24821000-24822200	Weak transcription	Fetal Intestine Large	intestine
40	chr14:24821000-24823400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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