Variant report

Variant	rs71474960
Chromosome Location	chr11:8103421-8103422
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34510302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3421936	chr11:8101601-8104149	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3412612	chr11:8102026-8104049	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8102000-8103600	Active TSS	H9 Cell Line	embryonic stem cell
2	chr11:8102200-8103600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:8102200-8103600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:8102200-8103600	Active TSS	Aorta	Aorta
5	chr11:8102200-8103600	Active TSS	Psoas Muscle	Psoas
6	chr11:8102200-8103600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
7	chr11:8102200-8103800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:8102200-8103800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
9	chr11:8102400-8103600	Enhancers	Liver	Liver
10	chr11:8102400-8104200	Active TSS	A549	lung
11	chr11:8102600-8103600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr11:8102600-8103600	Active TSS	NH-A	brain
13	chr11:8103000-8103600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:8103000-8103600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:8103000-8103600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:8103000-8103600	Flanking Active TSS	Esophagus	oesophagus
17	chr11:8103000-8103600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
18	chr11:8103000-8103600	Flanking Bivalent TSS/Enh	Placenta	Placenta
19	chr11:8103000-8103800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
20	chr11:8103000-8103800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr11:8103000-8103800	Flanking Active TSS	HUVEC	blood vessel
22	chr11:8103000-8105600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:8103000-8108200	Enhancers	Fetal Heart	heart
24	chr11:8103200-8103600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:8103200-8103600	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:8103200-8103600	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:8103200-8103600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:8103200-8103600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:8103200-8103600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:8103200-8103600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
31	chr11:8103200-8103600	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
32	chr11:8103200-8103600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:8103200-8103600	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
34	chr11:8103200-8103600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:8103200-8103600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:8103200-8103600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
37	chr11:8103200-8103600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
38	chr11:8103200-8103600	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
39	chr11:8103200-8103600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
40	chr11:8103200-8103600	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
41	chr11:8103200-8103600	Flanking Active TSS	Left Ventricle	heart
42	chr11:8103200-8103600	Flanking Active TSS	Placenta Amnion	Placenta Amnion
43	chr11:8103200-8103600	Flanking Active TSS	Right Atrium	heart
44	chr11:8103200-8103600	Flanking Active TSS	Right Ventricle	heart
45	chr11:8103200-8103600	Flanking Bivalent TSS/Enh	HepG2	liver
46	chr11:8103200-8103600	Flanking Bivalent TSS/Enh	NHEK	skin
47	chr11:8103200-8103800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
48	chr11:8103200-8103800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:8103200-8103800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
50	chr11:8103200-8103800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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