Variant report

Variant	rs71478194
Chromosome Location	chr11:25980143-25980144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11606295	1.00[AFR][1000 genomes]
rs11606297	1.00[AFR][1000 genomes]
rs12785446	1.00[EUR][1000 genomes]
rs12785742	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12790868	1.00[AFR][1000 genomes]
rs12794093	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12799908	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12801007	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12801081	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12801253	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12804431	1.00[AFR][1000 genomes]
rs12804760	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12806164	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34005000	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34096903	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34298558	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35084032	1.00[EUR][1000 genomes]
rs35244317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35280958	1.00[EUR][1000 genomes]
rs35311118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35378844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35504731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35787307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35908683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36097185	1.00[EUR][1000 genomes]
rs71478183	1.00[EUR][1000 genomes]
rs71478186	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71478187	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71478195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71478196	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832091	chr11:25823826-26009887	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv897140	chr11:25905509-25991194	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv467777	chr11:25959082-25985507	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
8	nsv553898	chr11:25959082-25985507	Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
9	esv3348528	chr11:25964425-25982438	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25974400-25989400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:25975800-25982400	Weak transcription	Fetal Kidney	kidney
3	chr11:25979000-25981000	Enhancers	Fetal Lung	lung
4	chr11:25979400-25988600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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