Variant report

Variant	rs71480896
Chromosome Location	chr10:95974488-95974489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12769135	0.87[ASN][1000 genomes]
rs12775991	0.85[EUR][1000 genomes]
rs12780278	0.99[EUR][1000 genomes]
rs34911703	0.99[EUR][1000 genomes]
rs35417689	0.97[EUR][1000 genomes]
rs35632833	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36113000	0.98[EUR][1000 genomes]
rs4918159	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:95960000-95991800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:95966600-95987000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:95967400-95988000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:95970800-96005800	Weak transcription	Colonic Mucosa	Colon
6	chr10:95971000-95994000	Weak transcription	Gastric	stomach
7	chr10:95971200-95974600	Weak transcription	Fetal Intestine Small	intestine
8	chr10:95971200-95974800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr10:95971200-95977400	Weak transcription	HSMM	muscle
10	chr10:95971200-95979200	Weak transcription	Fetal Heart	heart
11	chr10:95971200-95979600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:95971200-95983800	Weak transcription	Pancreas	Pancrea
13	chr10:95971200-95987200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:95972400-95975000	Enhancers	Liver	Liver
15	chr10:95972600-95974600	Enhancers	Stomach Smooth Muscle	stomach
16	chr10:95972600-95975200	Enhancers	Psoas Muscle	Psoas
17	chr10:95972800-95975000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr10:95973000-95974600	Enhancers	Ovary	ovary
19	chr10:95973000-95975200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:95973200-95974800	Enhancers	Lung	lung
21	chr10:95973200-95975400	Enhancers	Aorta	Aorta
22	chr10:95973200-95980200	Weak transcription	Fetal Intestine Large	intestine
23	chr10:95973200-95983800	Weak transcription	Fetal Lung	lung
24	chr10:95973400-95974600	Weak transcription	A549	lung
25	chr10:95973400-95974800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr10:95973400-96012200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:95973600-95974600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:95973600-95975000	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr10:95973800-95974600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:95973800-95975000	Enhancers	H9 Cell Line	embryonic stem cell
31	chr10:95973800-95975000	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr10:95973800-95976200	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr10:95973800-95977000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:95974000-95974600	Enhancers	H1 Cell Line	embryonic stem cell
35	chr10:95974000-95974600	Weak transcription	Fetal Stomach	stomach
36	chr10:95974000-95974800	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr10:95974000-95975000	Genic enhancers	Fetal Muscle Trunk	muscle
38	chr10:95974200-95974800	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr10:95974200-95974800	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr10:95974200-95975000	Enhancers	Left Ventricle	heart
41	chr10:95974200-95975000	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr10:95974200-95977400	Weak transcription	HSMMtube	muscle
43	chr10:95974200-96034000	Weak transcription	Colon Smooth Muscle	Colon
44	chr10:95974400-95974800	Enhancers	Right Atrium	heart
45	chr10:95974400-95975000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:95974400-95975000	Enhancers	Brain Germinal Matrix	brain
47	chr10:95974400-95976400	Genic enhancers	Fetal Muscle Leg	muscle
48	chr10:95974400-95987800	Weak transcription	Fetal Brain Female	brain

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