Variant report

Variant	rs71482348
Chromosome Location	chr10:96990597-96990598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96941976..96944883-chr10:96989765..96992078,3	MCF-7	breast:
2	chr10:96989099..96991002-chr10:97047738..97051859,4	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDLIM1-1	chr10:96990423-96990901	ENSG00000234026
2	lnc-PDLIM1-1	chr10:96990423-96990825	NONHSAT015752
3	lnc-PDLIM1-1	chr10:96990423-96990901	NONHSAT015753
4	lnc-PDLIM1-1	chr10:96990423-96990825	NONHSAT015754

No data

Variant related genes	Relation type
ENSG00000225533	Chromatin interaction
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35461306	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1834151	chr10:96925446-96992955	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96970200-96992400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:96987400-96990800	Enhancers	NHDF-Ad	bronchial
3	chr10:96987800-96991000	Enhancers	HMEC	breast
4	chr10:96988000-96990800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:96988400-96990600	Enhancers	Hela-S3	cervix
6	chr10:96988800-96990600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr10:96989200-96990600	Flanking Active TSS	NH-A	brain
8	chr10:96989200-96990800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr10:96989200-96990800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr10:96989200-96990800	Flanking Active TSS	NHEK	skin
11	chr10:96989200-96991000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:96989400-96990600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:96989600-96990800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:96989600-96991000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:96989600-96991000	Active TSS	Brain Anterior Caudate	brain
16	chr10:96989600-96991000	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr10:96989600-96991200	Active TSS	Brain Angular Gyrus	brain
18	chr10:96989800-96990600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
19	chr10:96989800-96990600	Flanking Active TSS	Osteobl	bone
20	chr10:96989800-96990800	Active TSS	Fetal Brain Male	brain
21	chr10:96989800-96991000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:96989800-96991000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:96989800-96991000	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr10:96989800-96991000	Active TSS	Brain Cingulate Gyrus	brain
25	chr10:96989800-96991000	Active TSS	Brain Germinal Matrix	brain
26	chr10:96989800-96991000	Active TSS	Fetal Brain Female	brain
27	chr10:96989800-96991600	Active TSS	H9 Cell Line	embryonic stem cell
28	chr10:96990000-96990600	Enhancers	Lung	lung
29	chr10:96990000-96990800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:96990000-96991000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:96990000-96991000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:96990000-96991000	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr10:96990000-96991000	Flanking Active TSS	GM12878-XiMat	blood
34	chr10:96990000-96991200	Active TSS	Fetal Kidney	kidney
35	chr10:96990000-96991400	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr10:96990000-96991400	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr10:96990000-96991600	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr10:96990000-96995400	Weak transcription	K562	blood
39	chr10:96990000-96995800	Weak transcription	HepG2	liver
40	chr10:96990200-96990600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:96990200-96990600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr10:96990200-96990600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:96990200-96990600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
44	chr10:96990200-96990600	Flanking Active TSS	Fetal Thymus	thymus
45	chr10:96990200-96990600	Active TSS	Right Atrium	heart
46	chr10:96990200-96990600	Enhancers	Spleen	Spleen
47	chr10:96990200-96990800	Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr10:96990200-96990800	Enhancers	Muscle Satellite Cultured Cells	--
49	chr10:96990200-96990800	Flanking Active TSS	HUVEC	blood vessel
50	chr10:96990200-96990800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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