Variant report

Variant	rs71482380
Chromosome Location	chr10:97593236-97593237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97593079-97593910	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:97593179-97593924	GM12891	blood:	n/a	n/a
3	POLR2A	chr10:97593141-97595045	GM12878	blood:	n/a	n/a
4	POLR2A	chr10:97590636-97594633	GM12878	blood:	n/a	n/a
5	POLR2A	chr10:97590647-97594863	GM18505	blood:	n/a	n/a
6	POLR2A	chr10:97590572-97594643	GM12891	blood:	n/a	n/a
7	POLR2A	chr10:97590646-97594744	GM12878	blood:	n/a	n/a
8	POLR2A	chr10:97593093-97593907	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000240527	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12775598	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17384909	1.00[ASN][1000 genomes]
rs34460315	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34969869	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35360884	1.00[AFR][1000 genomes]
rs72823709	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97575600-97596600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:97575800-97597000	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:97578600-97604400	Weak transcription	Aorta	Aorta
4	chr10:97581000-97600600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:97581200-97596400	Weak transcription	Small Intestine	intestine
6	chr10:97581200-97602000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:97582800-97594200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:97583400-97594600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:97584600-97596800	Weak transcription	Brain Angular Gyrus	brain
10	chr10:97586200-97600000	Weak transcription	Fetal Intestine Small	intestine
11	chr10:97590200-97594600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr10:97590200-97598800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr10:97590600-97594400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:97590600-97594800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:97590800-97593800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:97590800-97594200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:97591200-97593600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr10:97591400-97596400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:97591600-97601000	Weak transcription	Spleen	Spleen
20	chr10:97592000-97593400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:97592000-97602200	Enhancers	Primary B cells from cord blood	blood
22	chr10:97592000-97607200	Weak transcription	Left Ventricle	heart
23	chr10:97592200-97593400	Enhancers	Fetal Lung	lung
24	chr10:97592400-97593400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:97592600-97596400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:97592600-97596600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:97592600-97596800	Weak transcription	Brain Anterior Caudate	brain
28	chr10:97592600-97597000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:97592600-97632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:97592800-97593400	Genic enhancers	GM12878-XiMat	blood
31	chr10:97592800-97594200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr10:97592800-97595200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr10:97592800-97596600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:97592800-97600400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr10:97593000-97594200	Genic enhancers	Primary B cells from peripheral blood	blood
36	chr10:97593000-97595600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:97593000-97601400	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:97593200-97593800	Enhancers	Fetal Stomach	stomach
39	chr10:97593200-97594000	Enhancers	Duodenum Mucosa	Duodenum
40	chr10:97593200-97594200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links