Variant report

Variant	rs7148389
Chromosome Location	chr14:70565874-70565875
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70564827..70567373-chr14:70568673..70570974,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1009256	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs10873226	0.91[CHB][hapmap];0.93[CHD][hapmap];0.84[ASN][1000 genomes]
rs11158830	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs11850085	0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[ASN][1000 genomes]
rs12435324	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs12436004	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs12586172	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs12589441	0.91[CHB][hapmap];0.93[CHD][hapmap];0.85[ASN][1000 genomes]
rs12590573	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs12883784	0.91[CHB][hapmap];0.93[CHD][hapmap];0.84[ASN][1000 genomes]
rs12883875	0.91[CHB][hapmap];0.90[CHD][hapmap];0.84[ASN][1000 genomes]
rs12884186	0.91[CHB][hapmap];0.93[CHD][hapmap];0.84[ASN][1000 genomes]
rs12888543	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs12889279	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs12890130	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs149250	0.91[CHB][hapmap];0.93[CHD][hapmap]
rs149595	0.80[ASN][1000 genomes]
rs150942	0.95[CHB][hapmap];0.97[CHD][hapmap];0.83[ASN][1000 genomes]
rs150946	0.91[CHB][hapmap];0.93[CHD][hapmap];0.80[ASN][1000 genomes]
rs17107768	0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[ASN][1000 genomes]
rs178921	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs1958184	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs2169074	0.91[CHB][hapmap];0.93[CHD][hapmap];0.84[ASN][1000 genomes]
rs4144997	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs4899323	0.91[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4899324	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs4899325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902771	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4902775	0.86[ASN][1000 genomes]
rs4902776	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs57170277	0.81[ASN][1000 genomes]
rs57898302	0.98[ASN][1000 genomes]
rs6573922	0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[ASN][1000 genomes]
rs6573924	0.86[ASN][1000 genomes]
rs7161555	0.95[CHB][hapmap];0.97[CHD][hapmap];0.85[ASN][1000 genomes]
rs8006790	0.81[ASN][1000 genomes]
rs8006924	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs8013012	0.85[ASN][1000 genomes]
rs8015112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70560000-70567600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr14:70560000-70567800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr14:70563400-70567400	Enhancers	HSMMtube	muscle
4	chr14:70563600-70566000	Enhancers	Brain Cingulate Gyrus	brain
5	chr14:70563600-70566000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:70564400-70566000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:70564800-70566400	Enhancers	Brain Anterior Caudate	brain
8	chr14:70565000-70566400	Enhancers	Fetal Brain Male	brain
9	chr14:70565400-70566400	Weak transcription	Psoas Muscle	Psoas
10	chr14:70565800-70566000	Enhancers	Brain Angular Gyrus	brain
11	chr14:70565800-70578400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:70565800-70578800	Weak transcription	Primary hematopoietic stem cells	blood

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