Variant report

Variant	rs7148449
Chromosome Location	chr14:32048905-32048906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32039155..32042058-chr14:32047091..32049607,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10133085	1.00[AFR][1000 genomes]
rs2153559	1.00[AFR][1000 genomes]
rs2378935	1.00[AFR][1000 genomes]
rs2839946	1.00[YRI][hapmap]
rs4981107	1.00[AFR][1000 genomes]
rs4981108	1.00[AFR][1000 genomes]
rs4981856	1.00[AFR][1000 genomes]
rs4981870	1.00[AFR][1000 genomes]
rs4981878	1.00[AFR][1000 genomes]
rs6571445	1.00[AFR][1000 genomes]
rs6571446	1.00[AFR][1000 genomes]
rs7147440	1.00[AFR][1000 genomes]
rs8012634	1.00[YRI][hapmap]
rs8013556	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32031000-32054400	Weak transcription	Pancreas	Pancrea
2	chr14:32031400-32050000	Weak transcription	Fetal Brain Female	brain
3	chr14:32031400-32052800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:32031400-32069400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:32031400-32069600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr14:32031600-32049600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr14:32031600-32061200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr14:32031600-32069200	Weak transcription	Fetal Intestine Small	intestine
9	chr14:32031800-32050400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:32031800-32051200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:32031800-32051600	Weak transcription	Liver	Liver
12	chr14:32031800-32068200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr14:32031800-32069400	Weak transcription	A549	lung
14	chr14:32037400-32069400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr14:32037400-32071200	Weak transcription	HSMM	muscle
16	chr14:32037600-32069400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr14:32037800-32050000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr14:32040600-32051800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:32042400-32052200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:32042600-32052400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr14:32042800-32050200	Weak transcription	GM12878-XiMat	blood
22	chr14:32042800-32068800	Weak transcription	Primary B cells from cord blood	blood
23	chr14:32042800-32075600	Weak transcription	Primary T cells from cord blood	blood
24	chr14:32046200-32050800	Weak transcription	Fetal Stomach	stomach
25	chr14:32046200-32051000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:32046200-32110600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:32046400-32049800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr14:32046400-32052000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:32046400-32062800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr14:32046400-32073400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr14:32046600-32054400	Weak transcription	NHEK	skin
32	chr14:32046600-32069400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr14:32046800-32049000	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr14:32046800-32049000	Enhancers	Ovary	ovary
35	chr14:32046800-32049000	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr14:32046800-32049200	Enhancers	Fetal Heart	heart
37	chr14:32046800-32052600	Enhancers	Adipose Nuclei	Adipose
38	chr14:32047000-32049000	Enhancers	Fetal Lung	lung
39	chr14:32047000-32049200	Enhancers	Brain Substantia Nigra	brain
40	chr14:32047200-32069400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr14:32047400-32049200	Weak transcription	HepG2	liver
42	chr14:32047600-32049000	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr14:32047600-32049200	Enhancers	Brain Angular Gyrus	brain
44	chr14:32047600-32050000	Enhancers	Brain Germinal Matrix	brain
45	chr14:32047800-32052400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr14:32048000-32051600	Weak transcription	HSMMtube	muscle
47	chr14:32048000-32051800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:32048400-32049000	Enhancers	Brain Cingulate Gyrus	brain
49	chr14:32048400-32049600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr14:32048400-32049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links