Variant report

Variant	rs71484714
Chromosome Location	chr11:16415593-16415594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12789999	1.00[EUR][1000 genomes]
rs12798123	1.00[EUR][1000 genomes]
rs12798896	1.00[EUR][1000 genomes]
rs12799932	1.00[EUR][1000 genomes]
rs35570543	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16409000-16419200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16410000-16418800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:16414200-16416400	Enhancers	Fetal Intestine Small	intestine
4	chr11:16415000-16415800	Enhancers	Fetal Intestine Large	intestine
5	chr11:16415000-16416400	Weak transcription	Liver	Liver
6	chr11:16415200-16415600	Enhancers	K562	blood
7	chr11:16415200-16419400	Weak transcription	Small Intestine	intestine
8	chr11:16415400-16415800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:16415400-16415800	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr11:16415400-16416600	Weak transcription	Brain Germinal Matrix	brain
11	chr11:16415400-16416800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:16415400-16424400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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