Variant report

Variant	rs71486418
Chromosome Location	chr11:58240133-58240134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11229497	0.85[EUR][1000 genomes]
rs11229499	0.85[EUR][1000 genomes]
rs11603190	0.83[EUR][1000 genomes]
rs12786074	0.83[EUR][1000 genomes]
rs1815895	0.83[EUR][1000 genomes]
rs1944052	0.81[AMR][1000 genomes]
rs2510866	0.81[EUR][1000 genomes]
rs2515368	0.81[EUR][1000 genomes]
rs4280011	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4287352	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58899483	0.83[EUR][1000 genomes]
rs7113479	0.85[EUR][1000 genomes]
rs7115326	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7116652	0.82[EUR][1000 genomes]
rs7952094	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9919662	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1042491	chr11:58134936-58263639	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3342875	chr11:58239860-58240149	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3366315	chr11:58240023-58240182	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58239800-58243600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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