Variant report

Variant	rs7148786
Chromosome Location	chr14:73033653-73033654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12886899	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2238169	0.84[CHB][hapmap]
rs2283371	0.84[CHB][hapmap]
rs7141877	0.88[CHB][hapmap]
rs7146783	0.92[ASW][hapmap];0.84[CHB][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1047057	chr14:73024744-73221375	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:73026400-73034400	Weak transcription	Fetal Brain Male	brain
2	chr14:73027000-73039800	Weak transcription	Fetal Brain Female	brain
3	chr14:73030000-73033800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr14:73030200-73034000	Enhancers	Fetal Muscle Leg	muscle
5	chr14:73030200-73035200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:73030400-73035600	Enhancers	Fetal Stomach	stomach
7	chr14:73030800-73035600	Enhancers	Fetal Muscle Trunk	muscle
8	chr14:73031200-73034200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:73031400-73034000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:73032000-73034000	Weak transcription	Right Ventricle	heart
11	chr14:73032000-73035000	Weak transcription	Placenta	Placenta
12	chr14:73032600-73033800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr14:73032600-73034000	Weak transcription	Fetal Heart	heart
14	chr14:73032600-73034200	Enhancers	Primary B cells from peripheral blood	blood
15	chr14:73032600-73041400	Weak transcription	Right Atrium	heart
16	chr14:73032800-73033800	Enhancers	Primary B cells from cord blood	blood
17	chr14:73033000-73034000	Weak transcription	Left Ventricle	heart
18	chr14:73033400-73034400	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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