Variant report

Variant	rs7148801
Chromosome Location	chr14:33136896-33136897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17099177	1.00[CEU][hapmap]
rs17099409	1.00[CEU][hapmap]
rs61650333	0.98[ASN][1000 genomes]
rs8020272	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33117800-33149200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:33131000-33144200	Weak transcription	HSMMtube	muscle
3	chr14:33131800-33149000	Weak transcription	Brain Substantia Nigra	brain
4	chr14:33132200-33149000	Weak transcription	Brain Angular Gyrus	brain
5	chr14:33133600-33144000	Weak transcription	Fetal Heart	heart
6	chr14:33135000-33137400	Enhancers	Brain Cingulate Gyrus	brain
7	chr14:33135000-33144400	Weak transcription	Aorta	Aorta
8	chr14:33135000-33171800	Weak transcription	Psoas Muscle	Psoas
9	chr14:33135600-33137400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr14:33135600-33138200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr14:33136000-33138400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:33136200-33137400	Enhancers	Brain Anterior Caudate	brain
13	chr14:33136200-33137600	Enhancers	Brain Hippocampus Middle	brain
14	chr14:33136600-33137200	Weak transcription	NHDF-Ad	bronchial
15	chr14:33136800-33137000	Enhancers	Fetal Muscle Leg	muscle
16	chr14:33136800-33137200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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