Variant report

Variant	rs7148828
Chromosome Location	chr14:63121446-63121447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10498505	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12887497	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12895588	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs12898192	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1586637	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1586638	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17812028	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1906942	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1906943	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs34057138	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34572909	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs34829982	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs35458264	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs35542141	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs35653267	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35957238	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4899083	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4899084	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4899085	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4899086	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4899087	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4902154	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4902155	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4902156	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4902157	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4902158	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61996385	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs71422974	0.83[ASN][1000 genomes]
rs7153695	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7154189	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7154203	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7154360	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7157223	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8022481	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043508	chr14:62750671-63150403	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv949518	chr14:62777098-63123208	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63117000-63123800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:63120600-63121600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:63121400-63121800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:63121400-63122200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:63121400-63122200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr14:63121400-63123400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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