Variant report

Variant	rs7149262
Chromosome Location	chr14:37136545-37136546
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37129600..37133163-chr14:37133957..37137315,6	K562	blood:

Variant related genes	Relation type
ENSG00000198807	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1018464	0.92[ASN][1000 genomes]
rs11848377	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12878491	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12881240	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12881439	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12883049	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12885612	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12895715	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2236007	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34808452	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34914085	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67155512	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72679711	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv1053685	chr14:36915643-37245920	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv917279	chr14:36953511-37146655	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv819585	chr14:37130627-37138654	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv498084	chr14:37131404-37141112	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37131000-37137200	Bivalent/Poised TSS	Thymus	Thymus
2	chr14:37131600-37136600	Bivalent/Poised TSS	Fetal Thymus	thymus
3	chr14:37132200-37155200	Weak transcription	K562	blood
4	chr14:37135000-37136600	Bivalent Enhancer	Liver	Liver
5	chr14:37135400-37136600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr14:37135400-37136600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr14:37135600-37136600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr14:37135600-37136600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr14:37135600-37136800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr14:37135800-37136800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:37135800-37137200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr14:37136000-37136600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr14:37136000-37136600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:37136200-37136600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr14:37136200-37136600	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
16	chr14:37136200-37136600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
17	chr14:37136200-37136600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
18	chr14:37136400-37136600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
19	chr14:37136400-37136600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
20	chr14:37136400-37136600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr14:37136400-37136600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
22	chr14:37136400-37136600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:37136400-37145400	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links