Variant report

Variant	rs7149496
Chromosome Location	chr14:78267562-78267563
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:78223413..78230716-chr14:78265065..78269735,15	MCF-7	breast:
2	chr14:78266285..78268039-chr17:58469089..58471364,2	MCF-7	breast:
3	chr14:78225549..78228360-chr14:78265163..78268062,4	K562	blood:

Variant related genes	Relation type
ENSG00000141371	Chromatin interaction
ENSG00000197734	Chromatin interaction
ENSG00000100603	Chromatin interaction
ENSG00000268208	Chromatin interaction
ENSG00000170832	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11159292	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11159293	0.91[EUR][1000 genomes]
rs12100847	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17106436	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17106446	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs28445375	0.91[EUR][1000 genomes]
rs28583578	0.91[EUR][1000 genomes]
rs28794568	0.84[EUR][1000 genomes]
rs35636358	0.91[EUR][1000 genomes]
rs55637975	0.91[EUR][1000 genomes]
rs55854915	0.91[EUR][1000 genomes]
rs55898805	0.91[EUR][1000 genomes]
rs55942240	0.91[EUR][1000 genomes]
rs55970713	0.91[EUR][1000 genomes]
rs56014836	0.91[EUR][1000 genomes]
rs56099290	0.91[EUR][1000 genomes]
rs56202430	0.91[EUR][1000 genomes]
rs56244834	0.80[EUR][1000 genomes]
rs56249119	0.91[EUR][1000 genomes]
rs56404400	0.91[EUR][1000 genomes]
rs58157110	0.92[EUR][1000 genomes]
rs8019042	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2754594	chr14:78222798-78275549	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78266000-78267600	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr14:78266000-78267600	Active TSS	HepG2	liver
3	chr14:78266800-78267600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr14:78266800-78267800	Flanking Active TSS	Dnd41	blood
5	chr14:78267000-78270400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:78267200-78267600	Enhancers	Primary B cells from cord blood	blood
7	chr14:78267200-78267600	Enhancers	Liver	Liver
8	chr14:78267200-78267600	Enhancers	Small Intestine	intestine
9	chr14:78267200-78267800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:78267200-78267800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr14:78267200-78268200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr14:78267200-78268400	Enhancers	Placenta	Placenta
13	chr14:78267200-78268400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr14:78267200-78269400	Weak transcription	K562	blood
15	chr14:78267200-78270200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr14:78267200-78270400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:78267200-78270600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:78267200-78270800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr14:78267200-78271800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:78267200-78272400	Weak transcription	Left Ventricle	heart
21	chr14:78267200-78284800	Weak transcription	Brain Angular Gyrus	brain
22	chr14:78267200-78285200	Weak transcription	Colon Smooth Muscle	Colon
23	chr14:78267200-78285200	Weak transcription	Fetal Stomach	stomach
24	chr14:78267200-78285400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr14:78267200-78285400	Weak transcription	Lung	lung
26	chr14:78267200-78288200	Weak transcription	Spleen	Spleen
27	chr14:78267200-78288800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr14:78267200-78304200	Weak transcription	HSMMtube	muscle
29	chr14:78267200-78310800	Weak transcription	Esophagus	oesophagus
30	chr14:78267400-78267600	Enhancers	Primary T cells from cord blood	blood
31	chr14:78267400-78267600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:78267400-78267600	Enhancers	Brain Substantia Nigra	brain
33	chr14:78267400-78267600	Flanking Active TSS	GM12878-XiMat	blood
34	chr14:78267400-78267600	Active TSS	Hela-S3	cervix
35	chr14:78267400-78267600	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr14:78267400-78267800	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr14:78267400-78268000	Weak transcription	Fetal Intestine Small	intestine
38	chr14:78267400-78268400	Weak transcription	Adipose Nuclei	Adipose
39	chr14:78267400-78269600	Weak transcription	Psoas Muscle	Psoas
40	chr14:78267400-78269800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr14:78267400-78270000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr14:78267400-78270400	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr14:78267400-78270400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr14:78267400-78272800	Weak transcription	Stomach Mucosa	stomach
45	chr14:78267400-78285000	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:78267400-78285000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr14:78267400-78285200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr14:78267400-78285400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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