Variant report

Variant	rs71495483
Chromosome Location	chr10:26082494-26082495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10508707	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12771482	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12771652	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12777505	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12780444	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16926410	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17665266	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34144304	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35316154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36001363	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71495484	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71495485	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs752740	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26066200-26082800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:26069800-26082800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:26081600-26083000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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