Variant report

Variant	rs7149650
Chromosome Location	chr14:69279919-69279920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68659810..68661371-chr14:69279352..69280927,2	MCF-7	breast:
2	chr14:68934022..68936494-chr14:69279866..69281612,2	K562	blood:
3	chr14:68717006..68718787-chr14:69279079..69280637,2	MCF-7	breast:
4	chr14:68658060..68659603-chr14:69279653..69281747,2	MCF-7	breast:
5	chr14:68609991..68612093-chr14:69279827..69282795,2	MCF-7	breast:
6	chr14:69270505..69278428-chr14:69279681..69285729,13	K562	blood:
7	chr14:68705377..68708933-chr14:69277914..69280943,3	MCF-7	breast:
8	chr14:68984645..68986314-chr14:69279663..69281210,2	MCF-7	breast:
9	chr14:68734764..68737197-chr14:69278376..69281274,2	MCF-7	breast:
10	chr14:68406192..68411564-chr14:69279428..69286293,11	MCF-7	breast:

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10139199	0.92[AFR][1000 genomes]
rs4899260	0.92[AFR][1000 genomes]
rs4899261	0.88[AFR][1000 genomes]
rs4899262	0.91[AFR][1000 genomes]
rs4902652	0.92[AFR][1000 genomes]
rs59745064	0.85[EUR][1000 genomes]
rs73279198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9671648	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv902070	chr14:69244214-69308182	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69264400-69281200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:69271600-69281200	Enhancers	Fetal Muscle Leg	muscle
3	chr14:69271600-69281200	Enhancers	Fetal Stomach	stomach
4	chr14:69274000-69281000	Weak transcription	Aorta	Aorta
5	chr14:69274000-69281000	Weak transcription	Fetal Brain Male	brain
6	chr14:69274200-69280000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:69274200-69280000	Weak transcription	Brain Substantia Nigra	brain
8	chr14:69274200-69280000	Weak transcription	Psoas Muscle	Psoas
9	chr14:69274200-69280800	Enhancers	Primary B cells from peripheral blood	blood
10	chr14:69274200-69281000	Weak transcription	Brain Angular Gyrus	brain
11	chr14:69274400-69280800	Weak transcription	K562	blood
12	chr14:69274400-69281000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:69274400-69281000	Weak transcription	Osteobl	bone
14	chr14:69274600-69280000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr14:69274600-69280000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:69274600-69280400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:69274600-69280400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr14:69274600-69280400	Weak transcription	NHDF-Ad	bronchial
19	chr14:69274800-69280000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr14:69274800-69280000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr14:69274800-69280000	Weak transcription	HepG2	liver
22	chr14:69274800-69280200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr14:69274800-69280800	Weak transcription	HSMM	muscle
24	chr14:69275000-69280000	Weak transcription	Left Ventricle	heart
25	chr14:69275200-69280000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr14:69275200-69280000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr14:69275200-69280000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr14:69275600-69280200	Weak transcription	HSMMtube	muscle
29	chr14:69275800-69280000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr14:69275800-69280000	Weak transcription	Stomach Mucosa	stomach
31	chr14:69275800-69281000	Weak transcription	Gastric	stomach
32	chr14:69276400-69280000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr14:69276400-69280000	Weak transcription	Fetal Kidney	kidney
34	chr14:69276400-69280000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr14:69276400-69280200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr14:69276400-69280400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:69276400-69280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr14:69276600-69280000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr14:69276600-69280000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr14:69276600-69280400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr14:69276600-69280400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:69276600-69280800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:69276600-69286200	Weak transcription	Ovary	ovary
44	chr14:69277000-69280400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr14:69277200-69280000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr14:69277200-69280000	Weak transcription	Lung	lung
47	chr14:69277200-69280000	Weak transcription	Pancreas	Pancrea
48	chr14:69277200-69280000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr14:69277200-69280200	Weak transcription	Right Ventricle	heart
50	chr14:69277600-69280200	Weak transcription	A549	lung

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