Variant report

Variant	rs71505536
Chromosome Location	chr9:118058462-118058463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13290457	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34693706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118052000-118060000	Enhancers	Fetal Intestine Small	intestine
2	chr9:118052200-118059600	Enhancers	Fetal Intestine Large	intestine
3	chr9:118053200-118059400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:118054200-118059400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:118054400-118059200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr9:118054800-118059200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:118054800-118059200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:118055000-118059200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:118055200-118059000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:118055200-118059200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:118055200-118059400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:118055200-118063200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:118055400-118059400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:118055600-118059400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:118055800-118059400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:118056000-118059400	Weak transcription	NH-A	brain
17	chr9:118056400-118059000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:118057600-118059600	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr9:118058400-118058800	Enhancers	Duodenum Mucosa	Duodenum
20	chr9:118058400-118059400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:118058400-118059800	Enhancers	Rectal Mucosa Donor 31	rectum

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