Variant report

Variant	rs7150603
Chromosome Location	chr14:56267676-56267677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr14:56267661-56268005	MCF10A-Er-Src	breast:	n/a	chr14:56267839-56267846 chr14:56267836-56267843 chr14:56267834-56267845 chr14:56267838-56267846 chr14:56267836-56267848 chr14:56267837-56267847 chr14:56267838-56267847
2	FOS	chr14:56267490-56268014	MCF10A-Er-Src	breast:	n/a	chr14:56267839-56267846 chr14:56267836-56267843 chr14:56267834-56267845 chr14:56267838-56267846 chr14:56267836-56267848 chr14:56267837-56267847 chr14:56267838-56267847

No.	Distal block	Cell Line	Cell type
1	chr14:56260506..56263007-chr14:56264941..56267935,2	K562	blood:
2	chr14:56266295..56268885-chr14:56682625..56685589,2	K562	blood:
3	chr14:56266308..56267973-chr14:56270310..56271812,2	MCF-7	breast:

Variant related genes	Relation type
LINC00520	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10130664	0.80[YRI][hapmap]
rs10138273	0.93[ASN][1000 genomes]
rs10145326	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11158056	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12433383	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2152275	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2184561	0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs4901602	0.96[CEU][hapmap];0.94[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55802027	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6573063	0.87[AMR][1000 genomes]
rs67224654	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7155999	0.86[AMR][1000 genomes]
rs8006501	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8012083	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8012472	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8012607	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56257600-56271600	Weak transcription	Gastric	stomach
2	chr14:56262000-56269600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:56262200-56269800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:56262600-56269600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr14:56263600-56268000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:56263800-56267800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr14:56263800-56267800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr14:56264000-56267800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr14:56264000-56267800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr14:56265000-56267800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr14:56265200-56267800	Enhancers	K562	blood
12	chr14:56265600-56267800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr14:56265600-56269600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr14:56266200-56268000	Enhancers	HUVEC	blood vessel
15	chr14:56266600-56269600	Weak transcription	Fetal Intestine Large	intestine
16	chr14:56266800-56269000	Weak transcription	Stomach Mucosa	stomach
17	chr14:56267000-56268000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:56267000-56269800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:56267000-56270200	Enhancers	Hela-S3	cervix
20	chr14:56267200-56267800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr14:56267200-56267800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr14:56267200-56268400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr14:56267200-56270600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr14:56267200-56271000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:56267400-56267800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:56267400-56268000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:56267400-56268000	Enhancers	NHEK	skin
28	chr14:56267600-56268000	Enhancers	HMEC	breast

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