Variant report

Variant	rs71506639
Chromosome Location	chr3:168697137-168697138
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10117357	0.83[EUR][1000 genomes]
rs10117431	0.86[EUR][1000 genomes]
rs10124292	0.83[EUR][1000 genomes]
rs10971806	0.92[EUR][1000 genomes]
rs11536748	0.82[EUR][1000 genomes]
rs12002215	0.83[EUR][1000 genomes]
rs12338587	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12338927	0.82[EUR][1000 genomes]
rs12340535	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12341652	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12341737	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12343385	0.92[EUR][1000 genomes]
rs12346432	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12347811	0.96[EUR][1000 genomes]
rs12347985	0.92[EUR][1000 genomes]
rs13286511	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13290412	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13298908	0.89[EUR][1000 genomes]
rs13302664	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1998976	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34065256	0.92[EUR][1000 genomes]
rs34086781	0.81[EUR][1000 genomes]
rs34123151	0.81[EUR][1000 genomes]
rs34233417	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34331766	0.92[EUR][1000 genomes]
rs34708788	0.82[EUR][1000 genomes]
rs35412653	0.83[AMR][1000 genomes]
rs35545940	0.82[EUR][1000 genomes]
rs35625648	0.81[EUR][1000 genomes]
rs35824006	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35945655	0.84[EUR][1000 genomes]
rs3758195	0.92[EUR][1000 genomes]
rs3758196	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4741826	0.85[EUR][1000 genomes]
rs4741829	0.85[EUR][1000 genomes]
rs60796901	0.92[EUR][1000 genomes]
rs6476451	0.80[EUR][1000 genomes]
rs66463406	0.88[EUR][1000 genomes]
rs66763574	0.82[EUR][1000 genomes]
rs7028812	0.82[EUR][1000 genomes]
rs7041836	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71506638	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71506645	0.82[EUR][1000 genomes]
rs9695619	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829790	chr3:168591665-168781758	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:168692600-168700800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:168693200-168700400	Weak transcription	Brain Germinal Matrix	brain
3	chr3:168696200-168700600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:168696200-168700800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:168696400-168699200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:168696800-168699200	Weak transcription	Fetal Lung	lung

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