Variant report

Variant	rs7151024
Chromosome Location	chr14:71268446-71268447
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:71251307..71253279-chr14:71267106..71269549,2	MCF-7	breast:
2	chr14:71265603..71269219-chr14:71272232..71276913,5	MCF-7	breast:
3	chr14:71130975..71133007-chr14:71267977..71270888,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006432	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10083428	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847356	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847373	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590049	0.80[EUR][1000 genomes]
rs1548584	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108444	0.92[YRI][hapmap]
rs17108554	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs17176985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177097	0.80[EUR][1000 genomes]
rs17766512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17766551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17766661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859460	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742847	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4595741	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4899374	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4902857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902858	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902859	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57284652	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57843652	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59858521	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60533515	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61988426	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61988427	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990472	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990476	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990481	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990518	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61990519	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990520	0.87[EUR][1000 genomes]
rs61990521	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990523	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990526	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61990527	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61990550	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990551	0.80[EUR][1000 genomes]
rs6573982	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573983	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs7141204	0.81[EUR][1000 genomes]
rs7150427	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757570	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006715	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018972	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs8019053	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs8020803	0.80[EUR][1000 genomes]
rs8022621	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039460	chr14:71176898-71371125	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1035416	chr14:71212882-71623271	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv542126	chr14:71212882-71623271	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv1049741	chr14:71233043-71462509	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1037839	chr14:71263886-71625114	Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv542127	chr14:71263886-71625114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71222600-71274600	Weak transcription	Hela-S3	cervix
2	chr14:71239000-71269600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:71247800-71274600	Weak transcription	Stomach Mucosa	stomach
4	chr14:71248200-71271200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:71249400-71274400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr14:71249400-71274400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr14:71249400-71274600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr14:71249600-71274600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr14:71249800-71274600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:71256600-71269600	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:71257200-71274600	Weak transcription	Brain Anterior Caudate	brain
12	chr14:71257200-71274600	Weak transcription	Spleen	Spleen
13	chr14:71257800-71274800	Weak transcription	Colonic Mucosa	Colon
14	chr14:71259000-71274600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr14:71260000-71268600	Weak transcription	Esophagus	oesophagus
16	chr14:71260000-71274800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr14:71261200-71270400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr14:71261200-71270600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr14:71261200-71271400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:71261200-71274600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr14:71261600-71272000	Weak transcription	Fetal Stomach	stomach
22	chr14:71262800-71268600	Strong transcription	HMEC	breast
23	chr14:71263400-71268600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:71264600-71268800	Weak transcription	Brain Substantia Nigra	brain
25	chr14:71265000-71274600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr14:71265200-71274600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr14:71265400-71268600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:71265600-71269000	Strong transcription	HepG2	liver
29	chr14:71265800-71274600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr14:71266400-71268800	Strong transcription	Fetal Intestine Small	intestine
31	chr14:71267000-71268600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr14:71267000-71268800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr14:71267400-71274600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr14:71267600-71269600	Weak transcription	Primary B cells from cord blood	blood
35	chr14:71267600-71270600	Weak transcription	Primary T cells from cord blood	blood
36	chr14:71267600-71272400	Weak transcription	Fetal Intestine Large	intestine
37	chr14:71267600-71272800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr14:71267600-71274400	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr14:71267600-71274400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr14:71267600-71274600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr14:71267600-71274600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:71267600-71274600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr14:71267600-71274600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr14:71267600-71274600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr14:71267600-71274600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr14:71267800-71269000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr14:71267800-71269200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:71267800-71270200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr14:71267800-71270400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr14:71267800-71270600	Weak transcription	Liver	Liver

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