Variant report

Variant	rs71515092
Chromosome Location	chr8:69094260-69094261
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13282983	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17377173	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34276874	0.83[EUR][1000 genomes]
rs35992937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71515091	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71515093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331644	chr8:68806705-69189171	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69043600-69107000	Weak transcription	Brain Substantia Nigra	brain
2	chr8:69052600-69104600	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:69075000-69130800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:69075200-69109200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:69075200-69113800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:69076400-69104000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:69076400-69104200	Weak transcription	Adipose Nuclei	Adipose
8	chr8:69078000-69095200	Weak transcription	HUVEC	blood vessel
9	chr8:69078400-69104400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:69078400-69113600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:69078600-69097200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:69086000-69141600	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:69087800-69108800	Weak transcription	Left Ventricle	heart
14	chr8:69090200-69100000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:69090400-69126800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:69090600-69100000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:69090600-69104400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr8:69092800-69115200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:69094200-69094600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:69094200-69094600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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