Variant report

Variant	rs7151741
Chromosome Location	chr14:56596110-56596111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10134875	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10150333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158082	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes]
rs1117310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]
rs1382973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]
rs173352	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2054491	0.96[CHB][hapmap];0.91[JPT][hapmap]
rs2054492	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2086326	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs242420	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs242578	0.96[CHB][hapmap];0.83[JPT][hapmap]
rs3783675	0.96[CHB][hapmap];0.87[JPT][hapmap]
rs3844020	0.96[CHB][hapmap];0.91[JPT][hapmap]
rs3912200	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3912201	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4143949	0.96[CHB][hapmap];0.92[JPT][hapmap]
rs4901638	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7140444	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs7145330	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs899604	0.91[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56587400-56599200	Weak transcription	Colonic Mucosa	Colon
2	chr14:56587600-56596200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:56587600-56596200	Weak transcription	Fetal Stomach	stomach
4	chr14:56587600-56596200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr14:56587600-56597000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr14:56587600-56598000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr14:56589400-56596200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:56590200-56597000	Enhancers	Thymus	Thymus
9	chr14:56591000-56599600	Enhancers	Fetal Thymus	thymus
10	chr14:56591200-56596200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr14:56591200-56597000	Enhancers	Fetal Brain Male	brain
12	chr14:56591600-56596200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:56591600-56596200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:56591600-56596600	Weak transcription	Fetal Lung	lung
15	chr14:56591600-56598200	Weak transcription	Fetal Kidney	kidney
16	chr14:56592000-56597800	Weak transcription	Aorta	Aorta
17	chr14:56592000-56598800	Weak transcription	NHLF	lung
18	chr14:56592000-56601800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:56592400-56599800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:56592400-56600400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:56592600-56597200	Enhancers	Pancreas	Pancrea
22	chr14:56592800-56596200	Enhancers	Dnd41	blood
23	chr14:56593000-56596200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:56593000-56596600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:56593200-56596400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:56593200-56612800	Weak transcription	Brain Angular Gyrus	brain
27	chr14:56593400-56596400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:56593600-56596600	Enhancers	Fetal Brain Female	brain
29	chr14:56593600-56598200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr14:56593800-56598000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr14:56594200-56596200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr14:56594200-56598200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:56594200-56598400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr14:56594200-56599400	Enhancers	Brain Germinal Matrix	brain
35	chr14:56594400-56596400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr14:56594400-56596400	Weak transcription	Brain Substantia Nigra	brain
37	chr14:56594400-56597800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr14:56594400-56597800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr14:56594400-56598000	Weak transcription	Primary T cells from cord blood	blood
40	chr14:56594600-56600600	Enhancers	Stomach Mucosa	stomach
41	chr14:56594600-56601400	Enhancers	Colon Smooth Muscle	Colon
42	chr14:56594800-56597000	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr14:56594800-56597200	Enhancers	H1 Cell Line	embryonic stem cell
44	chr14:56594800-56597200	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr14:56594800-56597400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr14:56595000-56596200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:56595000-56597000	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr14:56595000-56597000	Enhancers	Gastric	stomach
49	chr14:56595000-56597000	Enhancers	Small Intestine	intestine
50	chr14:56595000-56599400	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links