Variant report

Variant	rs715192
Chromosome Location	chr17:15058525-15058526
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:14829340..14831544-chr17:15056657..15059444,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10521297	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12449828	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811118	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv907700	chr17:15026800-15059276	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv457682	chr17:15034841-15059276	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv457683	chr17:15034841-15059276	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv574434	chr17:15034841-15059276	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv574435	chr17:15034841-15060382	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv907701	chr17:15034841-15060382	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv907702	chr17:15034841-15065191	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1990	chr17:15041267-15094044	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
12	nsv9496	chr17:15043381-15059150	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3314561	chr17:15043780-15058817	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3314559	chr17:15043812-15058792	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv4607	chr17:15043817-15058764	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3314562	chr17:15043838-15058745	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3314560	chr17:15043879-15058744	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv498869	chr17:15043901-15058721	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3314564	chr17:15043902-15058721	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv1064535	chr17:15043914-15058991	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
21	nsv438272	chr17:15043999-15058525	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
22	nsv574437	chr17:15043999-15059276	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv574438	chr17:15043999-15060382	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
24	nsv457693	chr17:15043999-15060607	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
25	nsv457694	chr17:15043999-15060607	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
26	nsv574439	chr17:15043999-15060607	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
27	nsv827894	chr17:15044311-15058744	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
28	nsv514825	chr17:15044533-15058664	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
29	esv3315493	chr17:15052427-15058525	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
30	esv3315494	chr17:15052427-15058525	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15057600-15059000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr17:15058000-15058800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr17:15058000-15060800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr17:15058000-15061200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr17:15058200-15058600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr17:15058200-15058800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr17:15058200-15058800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr17:15058200-15059200	Enhancers	Osteobl	bone
9	chr17:15058200-15059600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr17:15058400-15058800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr17:15058400-15059200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr17:15058400-15059400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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