Variant report

Variant	rs71521786
Chromosome Location	chr7:26922310-26922311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1082313	0.87[ASN][1000 genomes]
rs13311400	0.88[ASN][1000 genomes]
rs2030137	0.85[ASN][1000 genomes]
rs213514	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs213532	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2252947	0.85[ASN][1000 genomes]
rs2264680	0.83[ASN][1000 genomes]
rs2428420	0.81[ASN][1000 genomes]
rs2936426	0.87[ASN][1000 genomes]
rs2960784	0.87[ASN][1000 genomes]
rs2960785	0.87[ASN][1000 genomes]
rs2960786	0.87[ASN][1000 genomes]
rs774248	0.85[ASN][1000 genomes]
rs774254	0.87[ASN][1000 genomes]
rs774255	0.84[ASN][1000 genomes]
rs774264	0.85[ASN][1000 genomes]
rs774267	0.85[ASN][1000 genomes]
rs774269	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv981787	chr7:26916457-26935351	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs71521786	HOTAIRM1	cis	Whole Blood	GTEx
rs71521786	SKAP2	cis	Whole Blood	GTEx
rs71521786	HOXA2	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26921000-26924800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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