Variant report
| Variant | rs7152366 |
|---|---|
| Chromosome Location | chr14:78605539-78605540 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11159332 | 0.86[AFR][1000 genomes] |
| rs12147569 | 0.86[AFR][1000 genomes] |
| rs12587169 | 0.81[ASN][1000 genomes] |
| rs1632297 | 0.86[AFR][1000 genomes] |
| rs1738890 | 0.83[AFR][1000 genomes] |
| rs35310663 | 0.83[AFR][1000 genomes] |
| rs35776078 | 0.83[AFR][1000 genomes] |
| rs35946142 | 0.83[AFR][1000 genomes] |
| rs404787 | 0.86[AFR][1000 genomes] |
| rs405935 | 0.86[AFR][1000 genomes] |
| rs410913 | 0.83[AFR][1000 genomes] |
| rs413845 | 0.80[AFR][1000 genomes] |
| rs414333 | 0.83[AFR][1000 genomes] |
| rs422198 | 0.83[AFR][1000 genomes] |
| rs422736 | 0.83[AFR][1000 genomes] |
| rs423802 | 0.83[AFR][1000 genomes] |
| rs423850 | 0.83[AFR][1000 genomes] |
| rs434064 | 0.86[AFR][1000 genomes] |
| rs435848 | 0.80[AFR][1000 genomes] |
| rs444572 | 0.83[AFR][1000 genomes] |
| rs446508 | 0.86[AFR][1000 genomes] |
| rs448148 | 0.83[AFR][1000 genomes] |
| rs451815 | 0.86[AFR][1000 genomes] |
| rs453412 | 0.84[AFR][1000 genomes] |
| rs4903708 | 0.86[AFR][1000 genomes] |
| rs4903709 | 0.85[AFR][1000 genomes] |
| rs7151106 | 0.84[AFR][1000 genomes] |
| rs7151442 | 0.81[AFR][1000 genomes] |
| rs8007460 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902109 | chr14:78603877-78634174 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7152366 | KIAA1704 | trans | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:78598600-78613000 | Weak transcription | Brain Substantia Nigra | brain |
