Variant report

Variant	rs71524263
Chromosome Location	chr7:19030278-19030279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2158495	0.94[ASN][1000 genomes]
rs2158496	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58797877	0.94[ASN][1000 genomes]
rs717983	0.81[ASN][1000 genomes]
rs73307090	0.94[ASN][1000 genomes]
rs73307092	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19013800-19040800	Weak transcription	Aorta	Aorta
2	chr7:19015800-19042400	Weak transcription	Left Ventricle	heart
3	chr7:19018800-19033600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:19019400-19034600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:19024600-19030800	Weak transcription	NHDF-Ad	bronchial
6	chr7:19029800-19030600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:19029800-19030600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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