Variant report

Variant	rs71525045
Chromosome Location	chr8:87413050-87413051
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:87412990-87413140	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87411776..87413717-chr8:87415308..87418300,2	K562	blood:
2	chr8:87407039..87409982-chr8:87412168..87414522,2	K562	blood:

Variant related genes	Relation type
WWP1	TF binding region
ENSG00000123124	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13281681	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv3360246	chr8:87200232-87419244	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87357800-87413600	Weak transcription	Pancreas	Pancrea
2	chr8:87366800-87423800	Weak transcription	Colonic Mucosa	Colon
3	chr8:87379600-87444000	Weak transcription	Brain Germinal Matrix	brain
4	chr8:87381000-87430800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr8:87381200-87425600	Weak transcription	K562	blood
6	chr8:87382400-87444000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:87383000-87415000	Weak transcription	NHDF-Ad	bronchial
8	chr8:87385000-87438000	Weak transcription	Fetal Brain Male	brain
9	chr8:87388200-87415200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr8:87388400-87430600	Weak transcription	Fetal Kidney	kidney
11	chr8:87388600-87441200	Weak transcription	Right Ventricle	heart
12	chr8:87396200-87415600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr8:87397400-87431200	Weak transcription	Fetal Brain Female	brain
14	chr8:87398800-87425800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr8:87399400-87413600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:87399600-87423400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr8:87399800-87429000	Weak transcription	Thymus	Thymus
18	chr8:87400400-87423800	Weak transcription	GM12878-XiMat	blood
19	chr8:87400800-87424000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:87401400-87414600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr8:87402400-87420600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr8:87402400-87425400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:87403000-87420800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:87403000-87429000	Weak transcription	Gastric	stomach
25	chr8:87403000-87430600	Weak transcription	Esophagus	oesophagus
26	chr8:87404200-87414200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr8:87404200-87426600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr8:87404200-87440600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr8:87404400-87413400	Weak transcription	Psoas Muscle	Psoas
30	chr8:87404400-87414200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr8:87404400-87414400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:87404400-87417000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr8:87404400-87425800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr8:87404400-87428400	Weak transcription	Brain Angular Gyrus	brain
35	chr8:87404400-87429000	Weak transcription	Aorta	Aorta
36	chr8:87404400-87429000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr8:87404600-87413600	Weak transcription	NH-A	brain
38	chr8:87404600-87414000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr8:87404600-87414400	Weak transcription	Osteobl	bone
40	chr8:87404600-87421400	Weak transcription	Small Intestine	intestine
41	chr8:87404600-87423800	Weak transcription	Colon Smooth Muscle	Colon
42	chr8:87404600-87425200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr8:87404600-87425600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr8:87404600-87425600	Weak transcription	Brain Substantia Nigra	brain
45	chr8:87404600-87426000	Weak transcription	Brain Hippocampus Middle	brain
46	chr8:87404600-87428000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr8:87404800-87417600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr8:87404800-87420400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr8:87405200-87426600	Weak transcription	Brain Anterior Caudate	brain
50	chr8:87405400-87414200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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