Variant report

Variant	rs7152726
Chromosome Location	chr14:24520218-24520219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr14:24520086-24520629	HepG2	liver:	n/a	n/a
2	SIN3AK20	chr14:24520162-24520437	HepG2	liver:	n/a	n/a
3	POLR2A	chr14:24520073-24521406	GM12892	blood:	n/a	n/a
4	FOSL2	chr14:24520048-24520734	HepG2	liver:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24519494..24523801-chr14:24562244..24565641,8	MCF-7	breast:
2	chr14:24519207..24521902-chr14:24608488..24612189,3	MCF-7	breast:
3	chr14:24505124..24506975-chr14:24520204..24522367,2	MCF-7	breast:
4	chr14:24519507..24523114-chr14:24581353..24584961,4	MCF-7	breast:
5	chr14:24519379..24521106-chr14:24565277..24567591,2	MCF-7	breast:
6	chr14:24519595..24523490-chr14:24615649..24620329,4	MCF-7	breast:
7	chr14:24520169..24522570-chr14:24571507..24573400,2	MCF-7	breast:
8	chr14:24519308..24521603-chr14:24550146..24552325,2	K562	blood:
9	chr14:24519146..24523502-chr14:24549476..24554002,6	MCF-7	breast:

No data

Variant related genes	Relation type
LRRC16B	TF binding region
ENSG00000129535	Chromatin interaction
ENSG00000092098	Chromatin interaction
ENSG00000225766	Chromatin interaction
ENSG00000100911	Chromatin interaction
ENSG00000100908	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000259321	Chromatin interaction
ENSG00000100889	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11158525	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11626841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877590	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62000819	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573541	0.83[EUR][1000 genomes]
rs7146599	0.81[CEU][hapmap]
rs7148185	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs8017358	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9972282	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv1049316	chr14:24405420-24583724	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv541999	chr14:24405420-24583724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv564047	chr14:24428509-24525634	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1052180	chr14:24429298-24555710	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv1037929	chr14:24478882-24522447	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
7	nsv1043854	chr14:24488131-24522447	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
8	nsv516023	chr14:24489605-24550224	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv983808	chr14:24503854-24523979	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
10	nsv482170	chr14:24505710-24520580	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
11	nsv1036658	chr14:24513905-24555710	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24506200-24520600	Weak transcription	Spleen	Spleen
2	chr14:24507200-24520600	Weak transcription	Lung	lung
3	chr14:24507200-24520600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr14:24507200-24520600	Weak transcription	A549	lung
5	chr14:24511400-24520600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:24512200-24520400	Weak transcription	Adipose Nuclei	Adipose
7	chr14:24515000-24520600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr14:24517000-24520600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr14:24517400-24520400	Weak transcription	Gastric	stomach
10	chr14:24518200-24520600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr14:24518400-24520400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:24518400-24520400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:24518400-24520600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr14:24518400-24520600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:24519200-24520400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr14:24519200-24520400	Weak transcription	GM12878-XiMat	blood
17	chr14:24519200-24520600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:24519400-24520400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr14:24519400-24520800	Weak transcription	Primary B cells from cord blood	blood
20	chr14:24519800-24520400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr14:24520000-24520400	Enhancers	Brain Anterior Caudate	brain
22	chr14:24520000-24520400	Enhancers	Brain Germinal Matrix	brain
23	chr14:24520000-24520400	Enhancers	Fetal Brain Male	brain
24	chr14:24520000-24520400	Enhancers	Fetal Brain Female	brain
25	chr14:24520000-24520400	Enhancers	Dnd41	blood
26	chr14:24520000-24520600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr14:24520000-24520600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr14:24520000-24520600	Enhancers	Pancreas	Pancrea
29	chr14:24520000-24520600	Bivalent Enhancer	HepG2	liver
30	chr14:24520200-24520400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr14:24520200-24520400	Enhancers	Primary T cells from cord blood	blood
32	chr14:24520200-24520400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:24520200-24520600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr14:24520200-24520600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr14:24520200-24520600	Enhancers	Stomach Mucosa	stomach
36	chr14:24520200-24521800	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr14:24520200-24522200	Active TSS	HUES64 Cell Line	embryonic stem cell

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