Variant report

Variant	rs71528495
Chromosome Location	chr8:116204383-116204384
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:116197091..116200038-chr8:116201920..116204912,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13252184	0.89[EUR][1000 genomes]
rs13267959	0.89[EUR][1000 genomes]
rs13274649	0.85[EUR][1000 genomes]
rs13274984	0.85[EUR][1000 genomes]
rs13277974	0.89[EUR][1000 genomes]
rs13280123	0.89[EUR][1000 genomes]
rs13439821	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs16887143	0.89[EUR][1000 genomes]
rs16887165	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs16887186	0.89[EUR][1000 genomes]
rs28645421	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34217298	0.85[EUR][1000 genomes]
rs34552607	0.89[EUR][1000 genomes]
rs35795849	0.89[EUR][1000 genomes]
rs35906055	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4500103	0.96[EUR][1000 genomes]
rs59909738	0.89[EUR][1000 genomes]
rs60776807	0.89[EUR][1000 genomes]
rs61620615	0.89[EUR][1000 genomes]
rs7004888	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7012742	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs71528498	0.89[EUR][1000 genomes]
rs71528499	0.89[EUR][1000 genomes]
rs71528500	0.96[EUR][1000 genomes]
rs71528501	0.89[EUR][1000 genomes]
rs73703186	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7822851	0.89[EUR][1000 genomes]
rs7824433	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs931558	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611976	chr8:115261134-116223865	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv891373	chr8:115351857-116295809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv891395	chr8:115642536-116222842	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv891399	chr8:116037798-116295809	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv891400	chr8:116139213-116373329	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:116196800-116215200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:116197600-116215600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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