Variant report

Variant	rs7152898
Chromosome Location	chr14:70819870-70819871
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70805368..70808326-chr14:70817743..70821217,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1044527	0.96[ASN][1000 genomes]
rs11158855	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11623974	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626325	0.91[ASN][1000 genomes]
rs12146968	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12147722	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12147825	0.91[ASN][1000 genomes]
rs12433355	0.97[ASN][1000 genomes]
rs12588244	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12589335	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12590679	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12879801	0.84[ASN][1000 genomes]
rs12887715	0.91[ASN][1000 genomes]
rs12890415	0.88[ASN][1000 genomes]
rs2332372	0.87[ASN][1000 genomes]
rs2332373	0.86[ASN][1000 genomes]
rs2332421	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34802428	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35164282	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35186208	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35469188	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35671518	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35859016	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3759774	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61977537	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61977542	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61977552	0.92[ASN][1000 genomes]
rs7141407	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7143274	0.89[ASN][1000 genomes]
rs7144424	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8005362	0.84[ASN][1000 genomes]
rs8014520	0.90[ASN][1000 genomes]
rs8015005	0.88[ASN][1000 genomes]
rs8015988	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016060	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8021180	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7152898	C14orf112	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70792800-70825200	Weak transcription	NH-A	brain
2	chr14:70800000-70825000	Weak transcription	HSMM	muscle
3	chr14:70800600-70821000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr14:70800800-70824800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:70801200-70822000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:70801200-70824200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr14:70801200-70825200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:70801800-70824400	Weak transcription	NHDF-Ad	bronchial
9	chr14:70802000-70824800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:70802000-70824800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr14:70802200-70822200	Weak transcription	NHEK	skin
12	chr14:70802400-70824800	Weak transcription	Brain Anterior Caudate	brain
13	chr14:70802600-70824800	Weak transcription	Brain Substantia Nigra	brain
14	chr14:70805000-70825200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr14:70806400-70823600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:70806600-70825200	Weak transcription	Fetal Kidney	kidney
17	chr14:70806800-70821200	Weak transcription	Aorta	Aorta
18	chr14:70806800-70825600	Weak transcription	Small Intestine	intestine
19	chr14:70807000-70821000	Weak transcription	Gastric	stomach
20	chr14:70807200-70822400	Weak transcription	Psoas Muscle	Psoas
21	chr14:70807400-70821400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:70807600-70821400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:70807800-70825200	Weak transcription	A549	lung
24	chr14:70808600-70821200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:70808600-70821800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr14:70809000-70821200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr14:70809800-70821200	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr14:70810800-70821400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:70811400-70824400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr14:70811600-70825000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr14:70811800-70820800	Weak transcription	Adipose Nuclei	Adipose
32	chr14:70812000-70822600	Weak transcription	Esophagus	oesophagus
33	chr14:70812000-70824600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr14:70812600-70821000	Weak transcription	Ovary	ovary
35	chr14:70812800-70821000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr14:70813000-70821000	Weak transcription	Liver	Liver
37	chr14:70813000-70823600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr14:70813000-70823600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:70813200-70821000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr14:70813200-70822600	Weak transcription	Spleen	Spleen
41	chr14:70813200-70825200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr14:70813200-70825400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr14:70813400-70821000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr14:70813400-70823600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr14:70813400-70824800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr14:70813400-70825800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr14:70813600-70825400	Weak transcription	Placenta	Placenta
48	chr14:70813800-70821000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr14:70813800-70823200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr14:70814000-70821000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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