Variant report

Variant	rs7153640
Chromosome Location	chr14:24807132-24807133
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24789439..24822082-chr14:24898039..24913135,99	MCF-7	breast:
2	chr14:24791358..24808812-chr14:24895309..24913599,55	K562	blood:
3	chr14:24781460..24810019-chr14:24892340..24914262,110	MCF-7	breast:
4	chr14:24802266..24804821-chr14:24805922..24808045,3	K562	blood:
5	chr14:24805754..24808104-chr14:24833773..24836418,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100968	Chromatin interaction
ENSG00000100445	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100441	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2295300	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv564060	chr14:24776401-24809795	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24804400-24807800	Weak transcription	Pancreas	Pancrea
2	chr14:24804600-24807200	Weak transcription	Right Atrium	heart
3	chr14:24804600-24807400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr14:24804600-24808000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
5	chr14:24804600-24808200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:24804800-24807800	Bivalent Enhancer	HepG2	liver
7	chr14:24804800-24808000	Weak transcription	Liver	Liver
8	chr14:24805000-24807400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:24805000-24807800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr14:24805000-24807800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:24805000-24807800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr14:24805000-24808000	Weak transcription	Small Intestine	intestine
13	chr14:24805200-24807400	Genic enhancers	Primary B cells from cord blood	blood
14	chr14:24805200-24807400	Weak transcription	Adipose Nuclei	Adipose
15	chr14:24805200-24807600	Strong transcription	Primary B cells from peripheral blood	blood
16	chr14:24805200-24807800	Weak transcription	Right Ventricle	heart
17	chr14:24805400-24807200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:24805400-24807400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr14:24805400-24807400	Strong transcription	Colonic Mucosa	Colon
20	chr14:24805400-24807400	Strong transcription	Duodenum Mucosa	Duodenum
21	chr14:24805400-24807600	Strong transcription	Primary T cells from cord blood	blood
22	chr14:24805400-24807600	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr14:24805400-24808200	Weak transcription	Osteobl	bone
24	chr14:24805400-24808400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:24805600-24807600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:24805600-24807600	Genic enhancers	Primary monocytes fromperipheralblood	blood
27	chr14:24805600-24807800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr14:24805600-24807800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:24805600-24808200	Strong transcription	Fetal Intestine Small	intestine
30	chr14:24805600-24808400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:24805800-24807200	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr14:24805800-24807200	Strong transcription	Lung	lung
33	chr14:24805800-24807200	Strong transcription	Spleen	Spleen
34	chr14:24805800-24807800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr14:24805800-24808000	Weak transcription	HUVEC	blood vessel
36	chr14:24805800-24808000	Genic enhancers	Monocytes-CD14+_RO01746	blood
37	chr14:24805800-24808200	Weak transcription	NHDF-Ad	bronchial
38	chr14:24806000-24807600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr14:24806000-24808000	Weak transcription	Placenta	Placenta
40	chr14:24806200-24807400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:24806200-24807400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr14:24806200-24807400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr14:24806200-24807600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr14:24806200-24807800	Strong transcription	Thymus	Thymus
45	chr14:24806400-24807200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr14:24806400-24807600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:24806400-24808000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
48	chr14:24806400-24808200	Enhancers	Left Ventricle	heart
49	chr14:24806400-24808400	Enhancers	Stomach Mucosa	stomach
50	chr14:24806800-24807200	Weak transcription	Gastric	stomach

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