Variant report
| Variant | rs71538884 |
|---|---|
| Chromosome Location | chr7:14748861-14748862 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs12533352 | 0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12536592 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12537147 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12669997 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12699654 | 0.87[EUR][1000 genomes] |
| rs12699655 | 0.87[EUR][1000 genomes] |
| rs12699658 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs13231864 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs13237347 | 0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1357872 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1525074 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1568846 | 0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17668635 | 0.87[EUR][1000 genomes] |
| rs1997040 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs34587189 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs35046572 | 0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs35731392 | 0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4719417 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6461121 | 0.88[EUR][1000 genomes] |
| rs6965637 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6966274 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6974971 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7785767 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9639213 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031041 | chr7:14624127-14999201 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv538741 | chr7:14624127-14999201 | Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv887712 | chr7:14717872-14829858 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14712800-14775200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
