Variant report

Variant	rs71539103
Chromosome Location	chr12:18604423-18604424
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13217505	0.87[ASN][1000 genomes]
rs1458409	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458424	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1902968	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2446248	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2504297	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2504312	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2504318	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2504319	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57641240	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71537202	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71539104	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9352502	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557667	chr12:18276749-18780949	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948898	chr12:18316993-19242092	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:18582600-18615200	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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