Variant report

Variant	rs71540764
Chromosome Location	chr7:16745564-16745565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16743127..16744790-chr7:16745470..16747645,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10245435	1.00[ASN][1000 genomes]
rs10257861	1.00[ASN][1000 genomes]
rs1144626	1.00[ASN][1000 genomes]
rs1144628	1.00[ASN][1000 genomes]
rs1149513	1.00[ASN][1000 genomes]
rs1167579	1.00[ASN][1000 genomes]
rs1177544	1.00[ASN][1000 genomes]
rs13242947	1.00[ASN][1000 genomes]
rs1626963	1.00[ASN][1000 genomes]
rs17136430	1.00[ASN][1000 genomes]
rs34385943	1.00[ASN][1000 genomes]
rs34494335	1.00[ASN][1000 genomes]
rs697518	1.00[ASN][1000 genomes]
rs697520	1.00[ASN][1000 genomes]
rs697521	1.00[ASN][1000 genomes]
rs697523	1.00[ASN][1000 genomes]
rs697525	1.00[ASN][1000 genomes]
rs706046	1.00[ASN][1000 genomes]
rs706049	1.00[ASN][1000 genomes]
rs706050	1.00[ASN][1000 genomes]
rs818483	1.00[ASN][1000 genomes]
rs818486	1.00[ASN][1000 genomes]
rs818493	1.00[ASN][1000 genomes]
rs818494	1.00[ASN][1000 genomes]
rs818997	1.00[ASN][1000 genomes]
rs819000	1.00[ASN][1000 genomes]
rs864211	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv830912	chr7:16623196-16791974	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv464397	chr7:16709708-16782767	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv606338	chr7:16709708-16782767	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv887760	chr7:16714974-16776257	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16701800-16752800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:16708800-16747800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:16710200-16752400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:16714000-16747200	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:16714000-16748400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:16719200-16746800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:16720800-16748800	Strong transcription	Placenta	Placenta
8	chr7:16724600-16747200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:16725200-16749000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:16725400-16746000	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr7:16725400-16749400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:16726800-16750600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:16727600-16748800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:16727800-16749000	Strong transcription	Dnd41	blood
15	chr7:16728400-16746400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr7:16728600-16747400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:16729000-16746800	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr7:16729200-16746200	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr7:16729200-16746400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:16729400-16746000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr7:16729400-16746200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:16729400-16746200	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr7:16730400-16747000	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr7:16730600-16746000	Strong transcription	K562	blood
25	chr7:16730800-16746200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:16734000-16746200	Strong transcription	Primary hematopoietic stem cells	blood
27	chr7:16734200-16746000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr7:16735800-16750400	Weak transcription	Fetal Kidney	kidney
29	chr7:16736600-16747600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:16736800-16749000	Weak transcription	Small Intestine	intestine
31	chr7:16737000-16746400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr7:16737600-16747200	Weak transcription	Brain Substantia Nigra	brain
33	chr7:16737800-16746800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr7:16737800-16749400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr7:16738000-16746000	Strong transcription	HSMM	muscle
36	chr7:16738000-16747200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:16738000-16747600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:16738000-16748200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr7:16738000-16748200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr7:16738000-16748200	Weak transcription	Gastric	stomach
41	chr7:16738000-16748600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr7:16738000-16748600	Weak transcription	Brain Angular Gyrus	brain
43	chr7:16738000-16748800	Weak transcription	Aorta	Aorta
44	chr7:16738000-16750400	Weak transcription	Brain Anterior Caudate	brain
45	chr7:16738000-16750800	Weak transcription	Ovary	ovary
46	chr7:16738000-16751400	Weak transcription	Fetal Brain Male	brain
47	chr7:16738000-16754600	Weak transcription	Esophagus	oesophagus
48	chr7:16738000-16758800	Weak transcription	Stomach Mucosa	stomach
49	chr7:16738600-16748200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr7:16739000-16746000	Strong transcription	Primary B cells from cord blood	blood

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