Variant report

Variant	rs7154142
Chromosome Location	chr14:65125549-65125550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65091021..65092580-chr14:65124236..65126291,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11158552	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56005968	0.85[AFR][1000 genomes]
rs7145207	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271639	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73271657	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74056372	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8010807	1.00[ASN][1000 genomes]
rs8013821	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1008915	chr14:65117194-65126733	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7154142	hCG_2023776///HNRNPA1///HNRPA1L-2///HNRPA1P4	trans	lymphoblastoid	RTeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65117000-65128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:65121400-65126200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:65121400-65126200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr14:65122000-65125600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:65122000-65128400	Weak transcription	HSMM	muscle
6	chr14:65122200-65125600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:65122200-65125600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:65122200-65125600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr14:65122200-65125800	Weak transcription	NHDF-Ad	bronchial
10	chr14:65122200-65126400	Weak transcription	Osteobl	bone
11	chr14:65122200-65128400	Weak transcription	Placenta	Placenta
12	chr14:65122200-65129600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr14:65122200-65129800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:65122200-65129800	Weak transcription	A549	lung
15	chr14:65122600-65125800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr14:65122600-65128400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:65123800-65126000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:65124000-65129600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr14:65124200-65128400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr14:65124200-65129600	Weak transcription	Fetal Muscle Leg	muscle
21	chr14:65125200-65126400	Enhancers	Primary hematopoietic stem cells	blood
22	chr14:65125400-65125600	Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr14:65125400-65125600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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