Variant report

Variant	rs71543349
Chromosome Location	chr7:139704062-139704063
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:139305236..139306017-chr7:139703647..139704843,3	MCF-7	breast:
2	chr7:139475354..139476270-chr7:139703680..139704339,2	MCF-7	breast:
3	chr7:139703522..139705249-chr7:139711647..139714491,2	K562	blood:
4	chr7:139286552..139287460-chr7:139703620..139704186,2	MCF-7	breast:
5	chr7:139673231..139674907-chr7:139703990..139705986,2	K562	blood:
6	chr7:139119239..139119940-chr7:139703455..139704291,2	MCF-7	breast:
7	chr7:139330352..139331470-chr7:139703432..139704776,8	K562	blood:
8	chr7:139328960..139329643-chr7:139703681..139704391,2	MCF-7	breast:
9	chr7:139303335..139304243-chr7:139703299..139704411,6	MCF-7	breast:
10	chr7:139700285..139702105-chr7:139703103..139705891,2	MCF-7	breast:
11	chr7:139330190..139331378-chr7:139703048..139704145,7	MCF-7	breast:
12	chr7:139286629..139287511-chr7:139703403..139704360,3	K562	blood:
13	chr7:139476831..139477538-chr7:139703309..139704264,3	K562	blood:
14	chr7:139303312..139304286-chr7:139703421..139704399,5	K562	blood:
15	chr7:139472005..139473850-chr7:139702644..139704624,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000059377	Chromatin interaction
ENSG00000064393	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12703488	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13221138	1.00[AFR][1000 genomes]
rs35018753	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1828807	chr7:139675550-139727974	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv608476	chr7:139696248-139717200	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv608477	chr7:139697043-139718147	Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139672000-139704400	Weak transcription	Lung	lung
2	chr7:139681000-139717800	Weak transcription	Thymus	Thymus
3	chr7:139690800-139705600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:139691200-139706000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:139692000-139706400	Weak transcription	Spleen	Spleen
6	chr7:139693200-139729000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:139695000-139707400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:139695200-139721600	Weak transcription	Colonic Mucosa	Colon
9	chr7:139695400-139706000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:139695800-139705400	Weak transcription	Fetal Heart	heart
11	chr7:139695800-139706400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:139695800-139709000	Weak transcription	Gastric	stomach
13	chr7:139699000-139707200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:139699200-139706400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:139702200-139712000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:139702200-139721800	Weak transcription	Fetal Thymus	thymus
17	chr7:139702400-139722400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr7:139702600-139704200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr7:139702600-139705600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:139702600-139742200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:139703200-139727800	Weak transcription	Right Atrium	heart
22	chr7:139703600-139704200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr7:139703600-139704200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr7:139703600-139704200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:139703600-139704200	Enhancers	GM12878-XiMat	blood
26	chr7:139703600-139704400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:139703600-139704400	Enhancers	HepG2	liver
28	chr7:139703800-139704200	Enhancers	A549	lung
29	chr7:139703800-139704600	Weak transcription	K562	blood
30	chr7:139704000-139705600	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links