Variant report

Variant	rs7154455
Chromosome Location	chr14:64736660-64736661
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12101211	0.92[ASN][1000 genomes]
rs12323665	0.88[EUR][1000 genomes]
rs17101765	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17179740	0.93[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs2772163	0.80[MEX][hapmap]
rs2987983	0.96[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs3020444	0.96[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];0.80[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs3020450	0.96[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3783736	0.93[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6573552	0.89[ASN][1000 genomes]
rs6573553	0.87[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap]
rs7148637	0.81[CEU][hapmap];0.87[MEX][hapmap]
rs8006145	0.83[CEU][hapmap]
rs8011682	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8020356	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs960070	0.87[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7154455	KCNH5	cis	parietal	SCAN
rs7154455	MTHFD1	cis	cerebellum	SCAN
rs7154455	MTHFD1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64727600-64741200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:64727600-64757600	Weak transcription	Ovary	ovary
3	chr14:64733200-64739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:64733600-64736800	Weak transcription	Dnd41	blood
5	chr14:64735400-64757200	Weak transcription	Thymus	Thymus
6	chr14:64736600-64736800	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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