Variant report

Variant	rs7154739
Chromosome Location	chr14:45505328-45505329
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:45430257..45433582-chr14:45504666..45507848,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198718	Chromatin interaction
ENSG00000179454	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17115668	1.00[EUR][1000 genomes]
rs1958262	1.00[EUR][1000 genomes]
rs73343231	1.00[EUR][1000 genomes]
rs73345288	1.00[EUR][1000 genomes]
rs8004730	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	esv1795667	chr14:45361680-45721052	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1794986	chr14:45368685-45650813	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	esv1803131	chr14:45441932-45726848	Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv1038384	chr14:45447187-45521583	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv933364	chr14:45467086-45705844	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45437000-45507400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:45437000-45514600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr14:45458200-45507400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:45459400-45507600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr14:45462400-45506200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr14:45463600-45507000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr14:45464400-45507400	Weak transcription	Spleen	Spleen
8	chr14:45464600-45507400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:45464600-45507600	Weak transcription	Hela-S3	cervix
10	chr14:45465600-45507800	Weak transcription	Fetal Heart	heart
11	chr14:45465800-45524000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:45465800-45552600	Weak transcription	HMEC	breast
13	chr14:45466200-45508600	Weak transcription	HepG2	liver
14	chr14:45466400-45508000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr14:45468600-45507400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:45469400-45506200	Weak transcription	Psoas Muscle	Psoas
17	chr14:45470400-45507400	Weak transcription	Right Ventricle	heart
18	chr14:45470600-45507600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:45476400-45507600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr14:45479000-45506000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:45480400-45507600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr14:45482800-45545400	Weak transcription	NHDF-Ad	bronchial
23	chr14:45485200-45507400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr14:45487000-45507400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr14:45487800-45507400	Weak transcription	Gastric	stomach
26	chr14:45488000-45506200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr14:45488600-45507800	Weak transcription	Fetal Brain Male	brain
28	chr14:45488800-45507400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:45489200-45505800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr14:45489800-45506200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:45492800-45506400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr14:45493000-45535000	Weak transcription	Small Intestine	intestine
33	chr14:45493600-45510600	Weak transcription	NHLF	lung
34	chr14:45494400-45506400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr14:45496400-45506200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr14:45498600-45515600	Weak transcription	NH-A	brain
37	chr14:45499000-45506200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr14:45499200-45523400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr14:45499800-45523400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr14:45500400-45506600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:45500800-45507400	Weak transcription	Primary B cells from cord blood	blood
42	chr14:45501000-45506600	Strong transcription	Fetal Stomach	stomach
43	chr14:45501200-45508800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr14:45501200-45509200	Strong transcription	Primary T cells from cord blood	blood
45	chr14:45501400-45505800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr14:45501400-45507400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:45501400-45507400	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr14:45501600-45507400	Weak transcription	Aorta	Aorta
49	chr14:45501800-45505800	Strong transcription	Primary hematopoietic stem cells	blood
50	chr14:45501800-45506600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links