Variant report

Variant	rs71549349
Chromosome Location	chr7:69791198-69791199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34856949	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71549347	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv607431	chr7:69699074-69828729	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1028870	chr7:69742438-69879231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69779600-69802200	Weak transcription	Primary B cells from cord blood	blood
2	chr7:69788400-69791200	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:69790000-69791800	Enhancers	NHEK	skin
4	chr7:69790400-69791200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:69790400-69791400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr7:69790400-69791400	Enhancers	Osteobl	bone
7	chr7:69790400-69791600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:69790400-69791600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:69790400-69791600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:69790400-69791600	Enhancers	NHLF	lung
11	chr7:69790400-69791800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:69790400-69791800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:69790400-69791800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:69790400-69791800	Enhancers	HMEC	breast
15	chr7:69790400-69791800	Enhancers	NHDF-Ad	bronchial
16	chr7:69790600-69791200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:69790600-69791200	Enhancers	Brain Angular Gyrus	brain
18	chr7:69790600-69791400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:69790600-69791400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:69790600-69791400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:69790600-69791400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr7:69790600-69791400	Enhancers	HSMMtube	muscle
23	chr7:69790600-69791400	Enhancers	NH-A	brain
24	chr7:69790600-69791600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:69790600-69791600	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr7:69790600-69791600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:69790600-69791600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:69790600-69791600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr7:69790600-69791600	Enhancers	Fetal Brain Male	brain
30	chr7:69790600-69791600	Enhancers	Dnd41	blood
31	chr7:69790600-69791600	Enhancers	HSMM	muscle
32	chr7:69790800-69791200	Enhancers	Fetal Brain Female	brain
33	chr7:69790800-69791400	Enhancers	Fetal Stomach	stomach
34	chr7:69790800-69791400	Enhancers	Fetal Thymus	thymus
35	chr7:69791000-69791400	Enhancers	Primary hematopoietic stem cells	blood

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