Variant report

Variant	rs71549375
Chromosome Location	chr7:70176816-70176817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:70175580..70177405-chr7:70179545..70181681,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11763510	1.00[ASN][1000 genomes]
rs11764444	0.80[AFR][1000 genomes]
rs11971176	1.00[ASN][1000 genomes]
rs13227868	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13236398	1.00[ASN][1000 genomes]
rs17502134	1.00[ASN][1000 genomes]
rs35024800	1.00[ASN][1000 genomes]
rs35075890	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35390538	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35567493	0.94[EUR][1000 genomes]
rs35607740	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923606	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3936228	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7793102	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv532783	chr7:69939570-70245396	Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3341834	chr7:69968031-70288098	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv532784	chr7:69969631-70204548	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1032378	chr7:70010392-70190353	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538929	chr7:70010392-70190353	Bivalent/Poised TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1024498	chr7:70016323-70190353	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv538930	chr7:70016323-70190353	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1025164	chr7:70061655-70469358	Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv538931	chr7:70061655-70469358	Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1029757	chr7:70061656-70190100	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538932	chr7:70061656-70190100	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1030496	chr7:70067475-70221743	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1017876	chr7:70073764-70434599	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
16	nsv1031761	chr7:70125949-70182744	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv538933	chr7:70125949-70182744	Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1022747	chr7:70169254-70301285	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	esv1834837	chr7:70171159-70202993	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv1839975	chr7:70171159-70202993	Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70161400-70178000	Weak transcription	Lung	lung
2	chr7:70161800-70191200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr7:70162200-70201600	Weak transcription	Primary B cells from cord blood	blood
4	chr7:70165600-70178000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:70166400-70182400	Weak transcription	Thymus	Thymus
6	chr7:70167400-70179400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:70170400-70178000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:70171600-70177200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:70172600-70182600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:70173200-70179400	Weak transcription	Aorta	Aorta
11	chr7:70174200-70177200	Enhancers	Fetal Brain Male	brain
12	chr7:70174400-70177200	Enhancers	Fetal Heart	heart
13	chr7:70174600-70178600	Enhancers	Liver	Liver
14	chr7:70174800-70178200	Strong transcription	Dnd41	blood
15	chr7:70175000-70178600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:70175000-70179600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:70175000-70180200	Weak transcription	Primary T cells from cord blood	blood
18	chr7:70175200-70178000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr7:70175400-70178000	Weak transcription	Fetal Intestine Small	intestine
20	chr7:70175400-70178200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr7:70175400-70178800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr7:70175400-70179400	Weak transcription	Fetal Lung	lung
23	chr7:70175600-70177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:70175600-70177800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr7:70175600-70179400	Weak transcription	Brain Angular Gyrus	brain
26	chr7:70175600-70183800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr7:70175800-70178000	Enhancers	Esophagus	oesophagus
28	chr7:70175800-70179400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr7:70176000-70177600	Weak transcription	Fetal Brain Female	brain
30	chr7:70176000-70177800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:70176000-70178000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:70176000-70179000	Enhancers	Pancreas	Pancrea
33	chr7:70176000-70179600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr7:70176000-70179600	Weak transcription	Brain Anterior Caudate	brain
35	chr7:70176000-70179800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr7:70176200-70177400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:70176200-70177800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr7:70176200-70178000	Weak transcription	Adipose Nuclei	Adipose
39	chr7:70176200-70179400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:70176200-70179400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr7:70176200-70184200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr7:70176200-70201600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr7:70176400-70177000	Genic enhancers	HSMM	muscle
44	chr7:70176400-70178400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:70176400-70179400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr7:70176400-70179400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr7:70176400-70189800	Weak transcription	Fetal Intestine Large	intestine
48	chr7:70176400-70192000	Weak transcription	HMEC	breast
49	chr7:70176400-70193800	Weak transcription	NH-A	brain
50	chr7:70176600-70177400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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