Variant report

Variant	rs7155173
Chromosome Location	chr14:39705935-39705936
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10130181	1.00[YRI][hapmap]
rs10146622	1.00[YRI][hapmap]
rs12433987	1.00[YRI][hapmap]
rs17693279	1.00[YRI][hapmap]
rs2415541	1.00[YRI][hapmap]
rs2899887	1.00[YRI][hapmap]
rs8011402	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv84871	chr14:39698400-39707997	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39703000-39706400	Active TSS	Fetal Intestine Large	intestine
2	chr14:39703000-39706400	Active TSS	Fetal Intestine Small	intestine
3	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
4	chr14:39704000-39708000	Weak transcription	A549	lung
5	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr14:39705000-39707800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:39705200-39706200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:39705200-39706200	Flanking Active TSS	Liver	Liver
9	chr14:39705400-39706000	Enhancers	HepG2	liver
10	chr14:39705800-39706200	Active TSS	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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