Variant report

Variant	rs7155501
Chromosome Location	chr14:55347827-55347828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr14:55347787-55348426	GM12878	blood:	n/a	chr14:55348201-55348213
2	EP300	chr14:55347820-55350131	SK-N-SH	brain:	n/a	chr14:55348166-55348180 chr14:55348796-55348810 chr14:55348744-55348752
3	FOXM1	chr14:55347808-55348331	GM12878	blood:	n/a	n/a
4	MXI1	chr14:55347817-55349899	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
MIR4308	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10133650	0.83[ASN][1000 genomes]
rs10136545	0.96[ASN][1000 genomes]
rs11158026	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12323905	0.82[ASN][1000 genomes]
rs2183081	0.83[ASN][1000 genomes]
rs2183084	0.81[ASN][1000 genomes]
rs28417208	0.96[ASN][1000 genomes]
rs3783640	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3783642	0.83[EUR][1000 genomes]
rs8018355	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	esv3323442	chr14:55346027-55348775	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	esv3358447	chr14:55346377-55348700	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	esv3322576	chr14:55346802-55348400	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55337600-55348600	Weak transcription	Hela-S3	cervix
2	chr14:55343800-55348200	Weak transcription	Fetal Intestine Large	intestine
3	chr14:55345000-55348000	Weak transcription	HepG2	liver
4	chr14:55345400-55348200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:55345400-55354800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:55345400-55368200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:55345600-55348000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr14:55345600-55348000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:55346200-55348000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr14:55346600-55348000	Weak transcription	Fetal Intestine Small	intestine
11	chr14:55346600-55348000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr14:55347000-55348000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:55347000-55348000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr14:55347000-55348000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr14:55347200-55348000	Weak transcription	Fetal Lung	lung
16	chr14:55347600-55348000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr14:55347600-55348000	Enhancers	Placenta	Placenta
18	chr14:55347600-55348000	Enhancers	Lung	lung
19	chr14:55347600-55348200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr14:55347600-55348200	Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr14:55347600-55348400	Flanking Active TSS	Liver	Liver
22	chr14:55347600-55349000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:55347600-55349200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr14:55347600-55349400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr14:55347600-55349400	Flanking Active TSS	Dnd41	blood
26	chr14:55347800-55348000	Enhancers	Primary B cells from cord blood	blood
27	chr14:55347800-55348000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chr14:55347800-55348000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr14:55347800-55348000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:55347800-55348000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:55347800-55348000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
32	chr14:55347800-55348000	Active TSS	Adipose Nuclei	Adipose
33	chr14:55347800-55348000	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr14:55347800-55348000	Enhancers	Fetal Kidney	kidney
35	chr14:55347800-55348000	Enhancers	HSMMtube	muscle
36	chr14:55347800-55348000	Flanking Active TSS	HUVEC	blood vessel
37	chr14:55347800-55348200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr14:55347800-55348200	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr14:55347800-55348200	Active TSS	Fetal Muscle Leg	muscle
40	chr14:55347800-55348200	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr14:55347800-55348400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:55347800-55348400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr14:55347800-55348400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr14:55347800-55348400	Active TSS	GM12878-XiMat	blood
45	chr14:55347800-55348600	Active TSS	Muscle Satellite Cultured Cells	--
46	chr14:55347800-55348600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr14:55347800-55348600	Active TSS	Monocytes-CD14+_RO01746	blood
48	chr14:55347800-55348800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:55347800-55348800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:55347800-55348800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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