Variant report

Variant	rs71555881
Chromosome Location	chr6:5175622-5175623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:5143652..5144542-chr6:5175040..5175982,3	MCF-7	breast:
2	chr6:5173898..5177005-chr6:5178469..5180479,3	K562	blood:
3	chr6:5122792..5124780-chr6:5175533..5177529,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13191522	1.00[AMR][1000 genomes]
rs13197072	1.00[AMR][1000 genomes]
rs13199874	1.00[AMR][1000 genomes]
rs13209775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13213175	1.00[AMR][1000 genomes]
rs13219725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34148454	1.00[AMR][1000 genomes]
rs34287447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34347613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34519114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34519637	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34538064	1.00[AMR][1000 genomes]
rs34774856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35100403	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35237000	1.00[AMR][1000 genomes]
rs35238319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35247793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35532313	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35608724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36003115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71540851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71540854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71555880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71555884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71557548	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71557555	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71557557	1.00[AMR][1000 genomes]
rs9392660	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9392661	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv600872	chr6:4975313-5342190	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1031837	chr6:4996667-5418726	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1034681	chr6:5070351-5387176	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv538113	chr6:5070351-5387176	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1018152	chr6:5077025-5387176	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
7	nsv600873	chr6:5089278-5400658	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1017821	chr6:5114609-5213200	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv538114	chr6:5114609-5213200	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1030254	chr6:5132261-5431585	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
11	nsv1034463	chr6:5137959-5345678	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1022336	chr6:5145194-5200687	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
13	nsv1018984	chr6:5145194-5200801	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1021646	chr6:5157795-5367254	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv538115	chr6:5157795-5367254	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5145400-5180800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:5153200-5178200	Weak transcription	HMEC	breast
3	chr6:5163800-5177600	Weak transcription	Aorta	Aorta
4	chr6:5163800-5189600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:5170400-5181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:5172200-5176200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:5172400-5175800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:5173000-5185400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:5173000-5190800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:5173200-5186000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:5173600-5181000	Weak transcription	NHEK	skin
12	chr6:5173800-5179800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:5174000-5176200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:5174000-5179800	Enhancers	Fetal Thymus	thymus
15	chr6:5174000-5181000	Weak transcription	Pancreas	Pancrea
16	chr6:5174400-5176000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:5174600-5176200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:5174600-5176200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:5174800-5175800	Enhancers	Fetal Lung	lung
20	chr6:5174800-5176200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:5174800-5176200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:5174800-5176200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:5174800-5176200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:5174800-5176800	Enhancers	Primary B cells from peripheral blood	blood
25	chr6:5174800-5176800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:5174800-5176800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:5174800-5180600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:5175000-5175800	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr6:5175000-5176000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
30	chr6:5175000-5176200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:5175000-5176200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:5175000-5176200	Flanking Active TSS	GM12878-XiMat	blood
33	chr6:5175000-5176200	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr6:5175000-5176200	Enhancers	NHLF	lung
35	chr6:5175000-5176800	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr6:5175200-5175800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:5175200-5175800	Enhancers	Brain Angular Gyrus	brain
38	chr6:5175200-5175800	Enhancers	Brain Germinal Matrix	brain
39	chr6:5175200-5175800	Enhancers	Fetal Kidney	kidney
40	chr6:5175200-5176000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:5175200-5176200	Enhancers	Primary hematopoietic stem cells	blood
42	chr6:5175200-5176200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:5175200-5176200	Enhancers	Adipose Nuclei	Adipose
44	chr6:5175200-5176200	Enhancers	Brain Anterior Caudate	brain
45	chr6:5175200-5176200	Enhancers	Thymus	Thymus
46	chr6:5175200-5176200	Enhancers	Spleen	Spleen
47	chr6:5175200-5177000	Enhancers	Primary B cells from cord blood	blood
48	chr6:5175200-5177000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr6:5175200-5179000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr6:5175400-5175800	Enhancers	Brain Inferior Temporal Lobe	brain

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